View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_high_70 (Length: 259)
Name: NF16068_high_70
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_70 |
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Alignment Details
Target: chr3 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 253
Target Start/End: Complemental strand, 33381061 - 33380826
Alignment:
| Q |
18 |
gaaactaattacgatgaagatgagcacgttattcttacccaatccgttgaaaaatattgaattactattactatatgcggtagattccattcaatctttc |
117 |
Q |
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| T |
33381061 |
gaaactaattacgatgaagatgagcacattattcttacccaatccgttgaaaaatattgaattactattactatatgcggtagattccattcaatctttc |
33380962 |
T |
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| Q |
118 |
gtacaatgatgcgaacatttggttggccaataagactaacacaaagtgacttctattttggacactcgaatccaaagaatcccaattcccaattccagta |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33380961 |
gtacaatgatgcgaacatttggttggccaataagactaacacaaagtgacttctattttggacactcgaatccaaagaatcccaattcccaattccagta |
33380862 |
T |
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| Q |
218 |
caattggcaatttgacattataaaattcaaaaagaa |
253 |
Q |
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|||||||||||||||||||||||||||||||||||| |
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| T |
33380861 |
caattggcaatttgacattataaaattcaaaaagaa |
33380826 |
T |
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