View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_high_73 (Length: 251)

Name: NF16068_high_73
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_high_73
NF16068_high_73
[»] chr8 (23 HSPs)
chr8 (1-236)||(25501794-25502029)
chr8 (38-185)||(25470579-25470727)
chr8 (38-161)||(25408497-25408619)
chr8 (38-136)||(25826429-25826527)
chr8 (38-165)||(24889722-24889850)
chr8 (38-138)||(25687830-25687930)
chr8 (38-165)||(25502022-25502151)
chr8 (38-165)||(25429024-25429152)
chr8 (43-110)||(25711588-25711654)
chr8 (40-138)||(25380412-25380509)
chr8 (32-112)||(25668039-25668120)
chr8 (185-236)||(25826385-25826436)
chr8 (45-136)||(25486535-25486625)
chr8 (92-165)||(25331851-25331925)
chr8 (38-76)||(25501755-25501793)
chr8 (40-136)||(25688919-25689014)
chr8 (1-33)||(24889892-24889924)
chr8 (1-33)||(25331729-25331761)
chr8 (1-33)||(25408422-25408454)
chr8 (1-33)||(25428949-25428981)
chr8 (1-33)||(25470505-25470537)
chr8 (185-236)||(25688873-25688924)
chr8 (185-235)||(25711533-25711587)
[»] scaffold0070 (2 HSPs)
scaffold0070 (40-136)||(40651-40748)
scaffold0070 (185-236)||(40743-40794)
[»] chr2 (2 HSPs)
chr2 (44-73)||(30932676-30932705)
chr2 (100-165)||(40025729-40025796)


Alignment Details
Target: chr8 (Bit Score: 236; Significance: 1e-130; HSPs: 23)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 1 - 236
Target Start/End: Original strand, 25501794 - 25502029
Alignment:
Q  1 gagagtgttggtaggggcagtgcttcaaatcaatcaaccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25501794 gagagtgttggtaggggcagtgcttcaaatcaatcaaccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgca 25501893  T
Q  101 tggaaaattctaatgtgtccaacaataattcattacaacctgagatgactatcaagcattgatttaatgattttctacctcttaaaatcaaccaagtcta 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25501894 tggaaaattctaatgtgtccaacaataattcattacaacctgagatgactatcaagcattgatttaatgattttctacctcttaaaatcaaccaagtcta 25501993  T
Q  201 gatagatagatattggaataactttttcccaagttg 236  Q
    ||||||||||||||||||||||||||||||||||||    
T  25501994 gatagatagatattggaataactttttcccaagttg 25502029  T

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Target: chr8; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 38 - 185
Target Start/End: Original strand, 25470579 - 25470727
Alignment:
Q  38 ccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgcatggaaaattctaatgtgtccaacaataattcattaca 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||    
T  25470579 ccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgcatggaaaattccaatatgtccaacaataattcattaca 25470678  T
Q  138 acctga-gatgactatcaagcattgatttaatgattttctacctcttaa 185  Q
    | | || ||| ||||  ||||||||||||||||||||||||||||||||    
T  25470679 atccgacgattactagtaagcattgatttaatgattttctacctcttaa 25470727  T

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Target: chr8; HSP #3
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 38 - 161
Target Start/End: Original strand, 25408497 - 25408619
Alignment:
Q  38 ccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgcatggaaaattctaatgtgtccaacaataattcattaca 137  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||    
T  25408497 ccaagttgcaatttaaaagtcagtcaacgaaaaaaggacaaaagtatagcgtacataattgcatggaaaattctaatatgtcc-acaataattcattaca 25408595  T
Q  138 acctgagatgactatcaagcattg 161  Q
    | |||||||||||||| |||||||    
T  25408596 atctgagatgactatcgagcattg 25408619  T

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Target: chr8; HSP #4
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 38 - 136
Target Start/End: Original strand, 25826429 - 25826527
Alignment:
Q  38 ccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgcatggaaaattctaatgtgtccaacaataattcattac 136  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25826429 ccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgcatggaaaattctaatgtgtccaacaataattcattac 25826527  T

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Target: chr8; HSP #5
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 38 - 165
Target Start/End: Complemental strand, 24889850 - 24889722
Alignment:
Q  38 ccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgcatggaaaattctaatgtgtccaacaataattcattaca 137  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||     
T  24889850 ccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaagagtatagcgtacataattgcatggaaaattctaatatgtccaagaataattcattact 24889751  T
Q  138 acctga-gatgactatcaagcattgattt 165  Q
    | | || ||||||||| ||||||||||||    
T  24889750 atccgacgatgactattaagcattgattt 24889722  T

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Target: chr8; HSP #6
Raw Score: 89; E-Value: 5e-43
Query Start/End: Original strand, 38 - 138
Target Start/End: Original strand, 25687830 - 25687930
Alignment:
Q  38 ccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgcatggaaaattctaatgtgtccaacaataattcattaca 137  Q
    |||| |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||    
T  25687830 ccaatttgcaacttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacaaaattgcatggaaaattctaatgtgtccaacaataattcattaca 25687929  T
Q  138 a 138  Q
    |    
T  25687930 a 25687930  T

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Target: chr8; HSP #7
Raw Score: 82; E-Value: 8e-39
Query Start/End: Original strand, 38 - 165
Target Start/End: Original strand, 25502022 - 25502151
Alignment:
Q  38 ccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacat-aattgcatggaaaattctaatgtgtccaacaataattcattac 136  Q
    ||||||||||||||||||||||||||| ||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||| | |||| |||||    
T  25502022 ccaagttgcaatttaaaagtcagtcaaggaaaaaaggacaaaactatagcgtacataaattgcatggaaaattctaatgtgtccaacgaaaatttattac 25502121  T
Q  137 aacctga-gatgactatcaagcattgattt 165  Q
    || | || ||||||||| ||||||||||||    
T  25502122 aatccgacgatgactattaagcattgattt 25502151  T

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Target: chr8; HSP #8
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 38 - 165
Target Start/End: Original strand, 25429024 - 25429152
Alignment:
Q  38 ccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgcatggaaaattctaatgtgtccaacaataattcattaca 137  Q
    |||||||||||||||||||||||||||  ||| |||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||     
T  25429024 ccaagttgcaatttaaaagtcagtcaagaaaagaaggacaagagtatagcgtacataattgcatggaaaattctaatatgtccaagaataattcattact 25429123  T
Q  138 acctga-gatgactatcaagcattgattt 165  Q
    | | || ||||||||| ||||||||||||    
T  25429124 atccgacgatgactattaagcattgattt 25429152  T

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Target: chr8; HSP #9
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 43 - 110
Target Start/End: Original strand, 25711588 - 25711654
Alignment:
Q  43 ttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgcatggaaaattc 110  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  25711588 ttgcaatttaaaagtcagtcaatgaaaa-aggacaaaagtatagcgtacataattgcatggaaaattc 25711654  T

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Target: chr8; HSP #10
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 40 - 138
Target Start/End: Original strand, 25380412 - 25380509
Alignment:
Q  40 aagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgcatggaaaattctaatgtgtccaacaataattcattacaa 138  Q
    ||||||||||||| ||||||||||| |||||||| |||| ||||| |||||||||||| |||||||||| |||||| |||||| |||||||||||||||    
T  25380412 aagttgcaatttacaagtcagtcaacgaaaaaagaacaagagtat-gcgtacataattacatggaaaatgctaatgggtccaagaataattcattacaa 25380509  T

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Target: chr8; HSP #11
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 32 - 112
Target Start/End: Original strand, 25668039 - 25668120
Alignment:
Q  32 aatcaaccaagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtat-agcgtacataattgcatggaaaattcta 112  Q
    |||||||||||||||||||||||||||||||||  |||||||||||| ||||| |||||||| |||||||||||||||||||    
T  25668039 aatcaaccaagttgcaatttaaaagtcagtcaacaaaaaaaggacaagagtataagcgtacaaaattgcatggaaaattcta 25668120  T

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Target: chr8; HSP #12
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 25826385 - 25826436
Alignment:
Q  185 aaatcaaccaagtctagatagatagatattggaataactttttcccaagttg 236  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25826385 aaatcaaccaagtctagatagatagatattggaataactttttcccaagttg 25826436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 45 - 136
Target Start/End: Original strand, 25486535 - 25486625
Alignment:
Q  45 gcaatttaaaagtcagtcaatgaaaaaaggacaaaagtata--gcgtacataattgcatggaaaattctaatgtgtccaacaataattcattac 136  Q
    |||||||||||||||||||| ||||||||||||| ||||||  ||||   ||||||||||||||||||||||||| |||| ||||| |||||||    
T  25486535 gcaatttaaaagtcagtcaaagaaaaaaggacaagagtatatagcgt---taattgcatggaaaattctaatgtggccaagaataactcattac 25486625  T

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Target: chr8; HSP #14
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 92 - 165
Target Start/End: Original strand, 25331851 - 25331925
Alignment:
Q  92 ataattgcatggaaaattctaatgtgtccaacaataattcattacaacctga-gatgactatcaagcattgattt 165  Q
    ||||||||| ||||||||||||| ||||||| ||||||||||||||| | ||  |||||||| ||||||||||||    
T  25331851 ataattgcaaggaaaattctaatatgtccaagaataattcattacaatccgacaatgactattaagcattgattt 25331925  T

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Target: chr8; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 38 - 76
Target Start/End: Original strand, 25501755 - 25501793
Alignment:
Q  38 ccaagttgcaatttaaaagtcagtcaatgaaaaaaggac 76  Q
    |||||||||||||||||||||||||||||||||||||||    
T  25501755 ccaagttgcaatttaaaagtcagtcaatgaaaaaaggac 25501793  T

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Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 40 - 136
Target Start/End: Original strand, 25688919 - 25689014
Alignment:
Q  40 aagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtatagcgtacataattgcatggaaaattctaatgtgtccaacaataattcattac 136  Q
    ||||||||||||||||||||||||| |||||||| |||| | ||| | |||||||||| | |||||| | || ||| |||| | |||||||||||||    
T  25688919 aagttgcaatttaaaagtcagtcaacgaaaaaagaacaagaatat-gtgtacataattacctggaaattgctgatgggtcctagaataattcattac 25689014  T

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Target: chr8; HSP #17
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 24889924 - 24889892
Alignment:
Q  1 gagagtgttggtaggggcagtgcttcaaatcaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  24889924 gagagtgttggtaggggcagtgcttcaaatcaa 24889892  T

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Target: chr8; HSP #18
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25331729 - 25331761
Alignment:
Q  1 gagagtgttggtaggggcagtgcttcaaatcaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  25331729 gagagtgttggtaggggcagtgcttcaaatcaa 25331761  T

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Target: chr8; HSP #19
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25408422 - 25408454
Alignment:
Q  1 gagagtgttggtaggggcagtgcttcaaatcaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  25408422 gagagtgttggtaggggcagtgcttcaaatcaa 25408454  T

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Target: chr8; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25428949 - 25428981
Alignment:
Q  1 gagagtgttggtaggggcagtgcttcaaatcaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  25428949 gagagtgttggtaggggcagtgcttcaaatcaa 25428981  T

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Target: chr8; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 33
Target Start/End: Original strand, 25470505 - 25470537
Alignment:
Q  1 gagagtgttggtaggggcagtgcttcaaatcaa 33  Q
    |||||||||||||||||||||||||||||||||    
T  25470505 gagagtgttggtaggggcagtgcttcaaatcaa 25470537  T

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Target: chr8; HSP #22
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 185 - 236
Target Start/End: Original strand, 25688873 - 25688924
Alignment:
Q  185 aaatcaaccaagtctagatagatagatattggaataactttttcccaagttg 236  Q
    ||||||||||||||||||| ||||||||||||||| |  |||||| ||||||    
T  25688873 aaatcaaccaagtctagattgatagatattggaatgatgttttcctaagttg 25688924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 185 - 235
Target Start/End: Original strand, 25711533 - 25711587
Alignment:
Q  185 aaatcaaccaagtctaga----tagatagatattggaataactttttcccaagtt 235  Q
    ||||||||||||||||||    ||||||||||||||||| | |||||||||||||    
T  25711533 aaatcaaccaagtctagatagatagatagatattggaatgattttttcccaagtt 25711587  T

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Target: scaffold0070 (Bit Score: 50; Significance: 1e-19; HSPs: 2)
Name: scaffold0070
Description:

Target: scaffold0070; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 40 - 136
Target Start/End: Complemental strand, 40748 - 40651
Alignment:
Q  40 aagttgcaatttaaaagtcagtcaatgaaaaaaggacaaaagtat-agcgtacataattgcatggaaaattctaatgtgtccaacaataattcattac 136  Q
    ||||||||||||||||||||||||| |||||||| |||| |||||  |||||||||||| |||| || || |||||| |||||| |||||||||||||    
T  40748 aagttgcaatttaaaagtcagtcaacgaaaaaagaacaagagtatgcgcgtacataattacatgaaatatgctaatgggtccaagaataattcattac 40651  T

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Target: scaffold0070; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 185 - 236
Target Start/End: Complemental strand, 40794 - 40743
Alignment:
Q  185 aaatcaaccaagtctagatagatagatattggaataactttttcccaagttg 236  Q
    ||||||||||||||||||| ||||||||||||||| | ||||||| ||||||    
T  40794 aaatcaaccaagtctagattgatagatattggaatgattttttcctaagttg 40743  T

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Target: chr2 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 44 - 73
Target Start/End: Original strand, 30932676 - 30932705
Alignment:
Q  44 tgcaatttaaaagtcagtcaatgaaaaaag 73  Q
    ||||||||||||||||||||||||||||||    
T  30932676 tgcaatttaaaagtcagtcaatgaaaaaag 30932705  T

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Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 165
Target Start/End: Complemental strand, 40025796 - 40025729
Alignment:
Q  100 atggaaaattctaatgtgtccaacaataattcattacaacctg--agatgactatcaagcattgattt 165  Q
    ||||||||| ||||||||||||| || ||||| |||||| |||  | |||||||| ||||||||||||    
T  40025796 atggaaaatgctaatgtgtccaaaaacaattccttacaatctgacaaatgactattaagcattgattt 40025729  T

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