View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16068_high_8 (Length: 663)
Name: NF16068_high_8
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_8 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 589; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 589; E-Value: 0
Query Start/End: Original strand, 1 - 646
Target Start/End: Complemental strand, 40750605 - 40749969
Alignment:
| Q |
1 |
ggtcccatgcattactatcacaaacattatctatctattcacatgcagttccaaaaatatcaattaatttatagtcaacacttaattaaggactaattaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
40750605 |
ggtcccatgcattactatcacaaacattatctat----tcacatgcagttccaaaaatatcaatta-----tagtcaacacttaattaaggactaattaa |
40750515 |
T |
|
| Q |
101 |
ttttcattgatgcacccagcattgaattgatttaaactcatcatcggtgaatttatggaagcaaactttgcaagctcttgaggtagaaattgatggttac |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40750514 |
ttttcattgatgcacccagcattgaattgatttaaactcatcatcgttgaatttatggaagcaaactttgcaagctcttgaggtagaaattgatggttac |
40750415 |
T |
|
| Q |
201 |
tcactccaagaaaatctctaaacccactagaattaccaaccatagttgcacttctactactacttggatcaaaattctcatgctgcttcattttctgatt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40750414 |
tcactccaagaaaatctctaaacccactagaattaccaaccatagttgcacttctactactacttggatcaaaattctcatgctgcttcattttctgatt |
40750315 |
T |
|
| Q |
301 |
aatgaccatattaacctcatcatggtttttgtttaaactcgttgtttgtgtagaggatgaactcattacaccaaaacttccactaaaaatggaaggatta |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
40750314 |
aatgaccatattaacctcatcatggtttttgtttaaactcgttgtttgtgtagaggatgaactcattacaccaaaacttccactaaatatggaaggatta |
40750215 |
T |
|
| Q |
401 |
gtactgcttcttgttgaacctatttgagctgctttctgaagaagtgcagtagctgacattggagtattagtttgagccatttgtataacatcggaaaaac |
500 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
40750214 |
gtactgcttcttgttgaacctatttgagctgctttctgaagaagtgcagtagctgacattggagtattagtttgagccatttgtataacatcggaaaaac |
40750115 |
T |
|
| Q |
501 |
ctgatgaaacatgatcaagtgaatatgaatgatgattaatctgttgattttcttggttcaaccacagtgacaagtttggtctttgctcatgatgaaatcc |
600 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
40750114 |
ctgatgaaacatgatcaagtgaatatgaatgatgattaatctgttgattttcttggttcaaccacagtgacaaatttggtctttgctcatgatgaaatcc |
40750015 |
T |
|
| Q |
601 |
tgcatgtggactaaactgttgaagattttgaagtccttgagatgat |
646 |
Q |
| |
|
||||||||||||||| ||||||| |||||||||||||||||||||| |
|
|
| T |
40750014 |
tgcatgtggactaaattgttgaatattttgaagtccttgagatgat |
40749969 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 399 - 462
Target Start/End: Original strand, 28495290 - 28495353
Alignment:
| Q |
399 |
tagtactgcttcttgttgaacctatttgagctgctttctgaagaagtgcagtagctgacattgg |
462 |
Q |
| |
|
||||| ||||||| |||||||| |||||||||||||| || ||||| ||||||||||||||||| |
|
|
| T |
28495290 |
tagtattgcttctagttgaacccatttgagctgctttttgcagaagagcagtagctgacattgg |
28495353 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 413 - 461
Target Start/End: Original strand, 50785480 - 50785528
Alignment:
| Q |
413 |
gttgaacctatttgagctgctttctgaagaagtgcagtagctgacattg |
461 |
Q |
| |
|
|||| ||| |||||||| |||||||||||||||||||| |||||||||| |
|
|
| T |
50785480 |
gttgcacccatttgagcagctttctgaagaagtgcagttgctgacattg |
50785528 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University