View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16068_high_85 (Length: 228)
Name: NF16068_high_85
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_85 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 100 - 203
Target Start/End: Original strand, 34361320 - 34361423
Alignment:
| Q |
100 |
gtttattatgttcacacctatccgacacccagacacatgcatccaatggtttttaatacaaaacttactccataaaactactcatgcatgcttgctttgt |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
34361320 |
gtttattatgttcacacctatccgacacccagacacatgcatccaatggtttttaatacaaaacttactccataaaactactaatgcatgcttgctttgt |
34361419 |
T |
|
| Q |
200 |
gttc |
203 |
Q |
| |
|
|||| |
|
|
| T |
34361420 |
gttc |
34361423 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 1 - 53
Target Start/End: Original strand, 34361221 - 34361273
Alignment:
| Q |
1 |
ccatcaggtgcctttgctactccttataccttcacaactgccattgatccaga |
53 |
Q |
| |
|
||||||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
34361221 |
ccatcaggtgcctgtgttactccttataccttcacaactgccattgatccaga |
34361273 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Complemental strand, 12118412 - 12118356
Alignment:
| Q |
1 |
ccatcaggtgcctttgctactccttataccttcacaactgccattgatccagagaag |
57 |
Q |
| |
|
|||||| |||||| || | ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
12118412 |
ccatcacgtgcctgtgttcctccttataccatcacaactgccattgatctagagaag |
12118356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 57
Target Start/End: Original strand, 37166996 - 37167052
Alignment:
| Q |
1 |
ccatcaggtgcctttgctactccttataccttcacaactgccattgatccagagaag |
57 |
Q |
| |
|
|||||| |||||| || | ||||||||||| |||||||||||||||||| ||||||| |
|
|
| T |
37166996 |
ccatcacgtgcctgtgttcctccttataccatcacaactgccattgatctagagaag |
37167052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University