View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_high_90 (Length: 221)
Name: NF16068_high_90
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_90 |
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Alignment Details
Target: chr1 (Bit Score: 98; Significance: 2e-48; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 1 - 98
Target Start/End: Complemental strand, 37632483 - 37632386
Alignment:
| Q |
1 |
agggtagattagtaacagtagatttgaaaatgaaattaagatagcataataaagccatgaacacattcttaattcccgctaaacaacactatacaaag |
98 |
Q |
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| T |
37632483 |
agggtagattagtaacagtagatttgaaaatgaaattaagatagcataataaagccatgaacacattcttaattcccgctaaacaacactatacaaag |
37632386 |
T |
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Target: chr1; HSP #2
Raw Score: 82; E-Value: 7e-39
Query Start/End: Original strand, 117 - 202
Target Start/End: Complemental strand, 37632361 - 37632276
Alignment:
| Q |
117 |
tcctactcattcacacttcactcttcttcttttccatttctgcaattgtgaaacaaaccctaatcccacaatccaatggcacccaa |
202 |
Q |
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| T |
37632361 |
tcctacccattcacacttcactcttcttcttttccatttctgcaattgtgaaacaaaccctaatcccacaatccaatggcacccaa |
37632276 |
T |
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