View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16068_high_91 (Length: 218)
Name: NF16068_high_91
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_high_91 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 100; Significance: 1e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 100; E-Value: 1e-49
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 20184710 - 20184831
Alignment:
| Q |
1 |
aggatgaggagataaattccttaattctatcatgctcaaggtaagatatcgtgcgtcaaaaa---tactgtgtataatgaagacatttttataattgtca |
97 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20184710 |
aggatgaggagataaattccttaattctatcatgctcaagataagatatcgtgcgtcagaaatactactgtgtataatgaagacatttttataattgtca |
20184809 |
T |
|
| Q |
98 |
tgcaaatattactactaagttg |
119 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
20184810 |
tgcaaatattactactaagttg |
20184831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 167 - 199
Target Start/End: Original strand, 20184880 - 20184912
Alignment:
| Q |
167 |
aacatagccactctcacacaattacccctaaaa |
199 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |
|
|
| T |
20184880 |
aacatagccactctcacacaattacccctaaaa |
20184912 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University