View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_10 (Length: 626)
Name: NF16068_low_10
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_10 |
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Alignment Details
Target: chr4 (Bit Score: 466; Significance: 0; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 466; E-Value: 0
Query Start/End: Original strand, 62 - 609
Target Start/End: Complemental strand, 1164785 - 1164238
Alignment:
| Q |
62 |
cagttgcaggtggaattatcggtggtgttataggcggcacactcgccaatggcggatacaatggtgggcacaatggtactcataattctgcaacaacatt |
161 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
1164785 |
cagttgcaggtggaattatcggtggtgttataggcggcacactcgccaatggcggacacaatggtgggcacaatggtactcataattctgcatcaacatt |
1164686 |
T |
|
| Q |
162 |
atctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagttaaatttcatcttta |
261 |
Q |
| |
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||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1164685 |
atcgggagggcctcatatttgtgtatcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagttaaatttcatcttta |
1164586 |
T |
|
| Q |
262 |
gttgcttctatttaggtctacattaatctctcttaatctttattaatatcatgttttcttgttgattagtttatatcatttggaaatgtaggatgttatg |
361 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
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| T |
1164585 |
gttgcttctatttaggtctacattaatctctcttagtctttattaatatcatgttttcttattgattagtttatatcatttggaaatgtagtatgttatg |
1164486 |
T |
|
| Q |
362 |
actagtttagtttca-ttctagttgcttctatttagtctttattgctactaaatactatgtattttggccacaattaatccattagttttcttgttgatt |
460 |
Q |
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|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
1164485 |
actagtttagtttcatttctagttgcttctatttagtctttattgctactaaatactatgtattttggccacaattaatcca-tagttttcttgttgatt |
1164387 |
T |
|
| Q |
461 |
atcatcaatttcttaatttgaatttgactgcaaatttgcaatatgnnnnnnnnncttttcaagtttggaataagtatgaaaatgatagaactagttgcat |
560 |
Q |
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| T |
1164386 |
atcatcaatttcttaatttgaatttgactgcaaatttgctatatgtttttttttcttttcaagtttgaaataagtatgaaaatgatagaactagttgcat |
1164287 |
T |
|
| Q |
561 |
ggagagtaggattgctcaccggccgggttgagtctctttaggttaaaaa |
609 |
Q |
| |
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||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
1164286 |
ggagagtaggattgctcaccggccgggttgagtctgtttaggttaaaaa |
1164238 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 70 - 224
Target Start/End: Complemental strand, 1148613 - 1148456
Alignment:
| Q |
70 |
ggtggaattatcggtggtg---ttataggcggcacactcgccaatggcggatacaatggtgggcacaatggtactcataattctgcaacaacattatctg |
166 |
Q |
| |
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|||||||||||||| |||| || ||||||||||| | ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1148613 |
ggtggaattatcggcggtggaattgtaggcggcacagttgccaatggcggtcacaatggtgggcacaatggtactcataattctgcaacaacattatctg |
1148514 |
T |
|
| Q |
167 |
gagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagac |
224 |
Q |
| |
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|| ||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
1148513 |
cagtgcctcatttttgtgtctcaacattgattttatgtatgagcttttggctttagac |
1148456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 108 - 305
Target Start/End: Complemental strand, 1172127 - 1171928
Alignment:
| Q |
108 |
caatggcggatacaatggtgggcacaatggtactcataattctgcaacaacattatctggagggcctcatatttgtgtctcaacattgattttatgtatg |
207 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||| ||||| |||||||||||||||||||||| | |||||||| || ||||||| ||||||||||| ||| || |
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| T |
1172127 |
caatggtggatataatggtgggtacaatggcactcagaattctgcaacaacattatctgcatggcctcattttagtgtctccacattgattttgtgtttg |
1172028 |
T |
|
| Q |
208 |
agcttttggctttagacaca-tggtttcacttccacaagttaaatttcatctttagttgcttctatttaggtctacattaat-ctctcttaatctttatt |
305 |
Q |
| |
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|| ||||||||||| ||||| | |||||||||| | |||| | |||||| |||||||||| ||||||| |||||||||| | |||||| |||||||| |
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| T |
1172027 |
agtttttggctttaaacacatttgtttcacttctagtagtttagtttcatttttagttgctattatttagacctacattaatccactcttagtctttatt |
1171928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 108 - 228
Target Start/End: Complemental strand, 1181375 - 1181255
Alignment:
| Q |
108 |
caatggcggatacaatggtgggcacaatggtactcataattctgcaacaacattatctggagggcctcatatttgtgtctcaacattgattttatgtatg |
207 |
Q |
| |
|
|||||| ||||| ||||||||| ||||||| ||||| |||||||||||||||||||||| | |||||||| ||||||||||||| |||||||| ||| || |
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|
| T |
1181375 |
caatggtggatataatggtgggtacaatggcactcagaattctgcaacaacattatctgcatggcctcatttttgtgtctcaactttgattttgtgtttg |
1181276 |
T |
|
| Q |
208 |
agcttttggctttagacacat |
228 |
Q |
| |
|
|||||||||||||| |||||| |
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| T |
1181275 |
agcttttggctttaaacacat |
1181255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 1137112 - 1137012
Alignment:
| Q |
147 |
ttctgcaacaacattatctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagt |
246 |
Q |
| |
|
||||||| || ||||||||| ||||||| || |||||||||||||||| |||||||| |||||||||||||||| |||| ||||||||||||| ||| |
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|
| T |
1137112 |
ttctgcaccatcattatctgcagggccttatgtttgtgtctcaacatttcttttatgtttgagcttttggctttaattacattgtttcacttccactagt |
1137013 |
T |
|
| Q |
247 |
t |
247 |
Q |
| |
|
| |
|
|
| T |
1137012 |
t |
1137012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 147 - 247
Target Start/End: Complemental strand, 1141766 - 1141666
Alignment:
| Q |
147 |
ttctgcaacaacattatctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagt |
246 |
Q |
| |
|
||||||| || ||||||||| ||||||| || |||||||||||||||| ||||||||| ||||||||||| | || || || ||||||||||||| ||| |
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|
| T |
1141766 |
ttctgcatcatcattatctgcagggccttatgtttgtgtctcaacatttattttatgtttgagcttttggttataatcatattgtttcacttccactagt |
1141667 |
T |
|
| Q |
247 |
t |
247 |
Q |
| |
|
| |
|
|
| T |
1141666 |
t |
1141666 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 396 - 461
Target Start/End: Complemental strand, 1148320 - 1148256
Alignment:
| Q |
396 |
gtctttattgctactaaatactatgtattttggccacaattaatc-cattagttttcttgttgatta |
461 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||| || ||| |||||||||||||||| |
|
|
| T |
1148320 |
gtctttattgctactaaatactatatattttggccacaattagtctcat--gttttcttgttgatta |
1148256 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 174 - 289
Target Start/End: Complemental strand, 1160124 - 1160009
Alignment:
| Q |
174 |
tcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacacatggtttcacttccacaagttaaatttcatctttagttgcttctatt |
273 |
Q |
| |
|
|||| |||||||| ||||||| ||||||||| |||| |||| |||||| || | |||| |||||||| | |||| | |||| ||||||||||||| || |
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| T |
1160124 |
tcatgtttgtgtcccaacatttattttatgtttgagttttttgctttaatcatgttgttttacttccactaattaagtatcatgtttagttgcttctgtt |
1160025 |
T |
|
| Q |
274 |
taggtctacattaatc |
289 |
Q |
| |
|
|||| ||| ||||||| |
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|
| T |
1160024 |
taggcctatattaatc |
1160009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 524 - 579
Target Start/End: Complemental strand, 1171559 - 1171504
Alignment:
| Q |
524 |
tttggaataagtatgaaaatgatagaactagttgcatggagagtaggattgctcac |
579 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||||||| | ||||||||| |||| |
|
|
| T |
1171559 |
tttgaaataagtatgaaaatgatagaactagttgcatgaattgtaggattgttcac |
1171504 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 147 - 241
Target Start/End: Complemental strand, 1145292 - 1145198
Alignment:
| Q |
147 |
ttctgcaacaacattatctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggctttagacacatggtttcacttcca |
241 |
Q |
| |
|
||||||||||||| | |||| | || ||||| || ||||||||||||| | ||||| ||||||||||||||||| ||||| ||||||||||| |
|
|
| T |
1145292 |
ttctgcaacaacagtttctgcaaggactcattttggtgtctcaacatttttcttatgcatgagcttttggctttaatcacattatttcacttcca |
1145198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 524 - 594
Target Start/End: Complemental strand, 1179860 - 1179790
Alignment:
| Q |
524 |
tttggaataagtatgaaaatgatagaactagttgcatggagagtaggattgctcaccggccgggttgagtc |
594 |
Q |
| |
|
|||| ||| ||||||||| ||| ||||||||||||||| ||||||| ||||||| | || |||||||||| |
|
|
| T |
1179860 |
tttgaaatgagtatgaaattgaaagaactagttgcatgtagagtagaattgctcgcgggttgggttgagtc |
1179790 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 140 - 221
Target Start/End: Complemental strand, 1133558 - 1133477
Alignment:
| Q |
140 |
ctcataattctgcaacaacattatctggagggcctcatatttgtgtctcaacattgattttatgtatgagcttttggcttta |
221 |
Q |
| |
|
|||||||||||||| || |||| | || |||| || || ||||| |||||||||| ||||||||| | | |||||||||||| |
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|
| T |
1133558 |
ctcataattctgcagcatcattttatgcagggacttatttttgtttctcaacatttattttatgtgtaatcttttggcttta |
1133477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 303 - 352
Target Start/End: Complemental strand, 1171901 - 1171852
Alignment:
| Q |
303 |
attaatatcatgttttcttgttgattagtttatatcatttggaaatgtag |
352 |
Q |
| |
|
|||||||||||||| ||||||||||| |||| | ||||||| |||||||| |
|
|
| T |
1171901 |
attaatatcatgttctcttgttgatttgtttgtgtcatttgtaaatgtag |
1171852 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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