View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16068_low_101 (Length: 216)
Name: NF16068_low_101
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_101 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 833875 - 833676
Alignment:
| Q |
1 |
cttcgtgacaaaatttgtttaaaaaaccaccccaacaccatccattctctttatatatatagtaagatatggaaacaatgtataccaaaccaattcaacc |
100 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
833875 |
cttcgtgacgaaatttgtttaaaaaaccaccccaacaccatccattctctttatatatatagtaagatatggaaacaatgtataccaaaccaattcaacc |
833776 |
T |
|
| Q |
101 |
gaactcgtgaactccaaaaatcagcttatttcattcatagtatttttaccacaaagacttgatcaataaccatttcatggatcggtcctacatcagcctg |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
833775 |
gaactcgtgaactccaaaaatcagcttatttcattcatagtatttttaccataaagacttgatcaataaccatttcatggatcggtcctacatcagcctg |
833676 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 61
Target Start/End: Original strand, 21190444 - 21190484
Alignment:
| Q |
21 |
aaaaaaccaccccaacaccatccattctctttatatatata |
61 |
Q |
| |
|
||||||| ||||||| |||||| |||||||||||||||||| |
|
|
| T |
21190444 |
aaaaaactaccccaaaaccatctattctctttatatatata |
21190484 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University