View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_104 (Length: 210)
Name: NF16068_low_104
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_104 |
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Alignment Details
Target: chr2 (Bit Score: 181; Significance: 5e-98; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 181; E-Value: 5e-98
Query Start/End: Original strand, 15 - 199
Target Start/End: Original strand, 32268178 - 32268362
Alignment:
| Q |
15 |
caaaggtaaatcaaatgtgttgagctgctatccactttggaatatccattcaggctttttagcatgttttcgtcttaatgttaacatcatatctgaaaaa |
114 |
Q |
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| T |
32268178 |
caaaggtaaatcaaatgtgttgagctgctatccactttggaatatccattcaggctttttagcatgttttcatcttaatgttaacatcatatctgaaaaa |
32268277 |
T |
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| Q |
115 |
cggtgttgagctcggtaatgaaaattcttcttaacctgagcatcatagtgagactcccaaacacattttgtctgcaccatcttca |
199 |
Q |
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| T |
32268278 |
cggtgttgagctcggtaatgaaaattcttcttaacctgagcatcatagtgagactcccaaacacattttgtctgcaccatcttca |
32268362 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 117; E-Value: 9e-60
Query Start/End: Original strand, 42 - 193
Target Start/End: Original strand, 32274335 - 32274484
Alignment:
| Q |
42 |
ctatccactttggaatatccattcaggctttttagcatgttttcgtcttaatgttaacatcatatctgaaaaacggtgttgagctcggtaatgaaaattc |
141 |
Q |
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| T |
32274335 |
ctatccactttggaat--ccattcaggctttttaacatgttttcgtcttaatgttgacatcatatatgataaacggtgttgagctcggtaatgaaaattc |
32274432 |
T |
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| Q |
142 |
ttcttaacctgagcatcatagtgagactcccaaacacattttgtctgcacca |
193 |
Q |
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| T |
32274433 |
ttcttaacctgagcatcgtagtgagactcccaaacacatttcgtctgcacca |
32274484 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 74; E-Value: 4e-34
Query Start/End: Original strand, 60 - 193
Target Start/End: Original strand, 24552480 - 24552613
Alignment:
| Q |
60 |
ccattcaggctttttagcatgttttcgtcttaatgttaacatcatatctgaaaaacggtgttgagctcggtaatgaaaattcttcttaacctgagcatca |
159 |
Q |
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| T |
24552480 |
ccattcaggatctctagcatgctttgctcttattgttgacatcatatcttggaaacggtgttgagctggataatgaaaattcttcttaacctgagcatca |
24552579 |
T |
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| Q |
160 |
tagtgagactcccaaacacattttgtctgcacca |
193 |
Q |
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| | |||||||||||||||||||||||||||||| |
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| T |
24552580 |
tggcgagactcccaaacacattttgtctgcacca |
24552613 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 66; Significance: 2e-29; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 60 - 193
Target Start/End: Complemental strand, 13899281 - 13899148
Alignment:
| Q |
60 |
ccattcaggctttttagcatgttttcgtcttaatgttaacatcatatctgaaaaacggtgttgagctcggtaatgaaaattcttcttaacctgagcatca |
159 |
Q |
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| T |
13899281 |
ccattcaggatctctagcatgctttgctcttactattgacatcatatcttggaaacggtgttgagctcgataatgaaaattcttcttaagctgagcatca |
13899182 |
T |
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| Q |
160 |
tagtgagactcccaaacacattttgtctgcacca |
193 |
Q |
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| | |||||||||||||||||||| ||||||||| |
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| T |
13899181 |
tggcgagactcccaaacacattttttctgcacca |
13899148 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 60 - 193
Target Start/End: Complemental strand, 13569461 - 13569328
Alignment:
| Q |
60 |
ccattcaggctttttagcatgttttcgtcttaatgttaacatcatatctgaaaaacggtgttgagctcggtaatgaaaattcttcttaacctgagcatca |
159 |
Q |
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||||||||| | | ||||||| ||| ||||| |||| ||||||||||| ||||||||| ||||||| |||||||||||||||||||| ||||||||| |
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| T |
13569461 |
ccattcaggatctctagcatgctttgctcttactgttgacatcatatcttggaaacggtgtcgagctcgataatgaaaattcttcttaacatgagcatca |
13569362 |
T |
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| Q |
160 |
tagtgagactcccaaacacattttgtctgcacca |
193 |
Q |
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| | |||||| |||||||||||| |||||||||| |
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| T |
13569361 |
tggggagacttccaaacacatttcgtctgcacca |
13569328 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 2e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 60 - 193
Target Start/End: Complemental strand, 23964282 - 23964149
Alignment:
| Q |
60 |
ccattcaggctttttagcatgttttcgtcttaatgttaacatcatatctgaaaaacggtgttgagctcggtaatgaaaattcttcttaacctgagcatca |
159 |
Q |
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||||||||| | | ||||||| ||| ||||| |||| ||||||||||| |||| |||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23964282 |
ccattcaggatctctagcatgctttgctcttactgttgacatcatatcttggaaactgtgttgagctcgataatgaaaattcttcttaacctgagcatca |
23964183 |
T |
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| Q |
160 |
tagtgagactcccaaacacattttgtctgcacca |
193 |
Q |
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| | ||||||||||||||||||| ||||||||| |
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| T |
23964182 |
tggcgagactcccaaacacatttcttctgcacca |
23964149 |
T |
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