View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_106 (Length: 208)
Name: NF16068_low_106
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_106 |
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| [»] scaffold0059 (1 HSPs) |
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| [»] scaffold0142 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 117; Significance: 8e-60; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 20246607 - 20246779
Alignment:
| Q |
19 |
ggaatgaccagtctttccttcataattagatagaattacattatgaggcttccactctctgtcgatgttaccaatccttttgagtaaggattgaggcatc |
118 |
Q |
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|||||||||| ||||||||||||||| || | ||||||||||||||||||| | ||| ||||| | ||||||||| ||||||||||||||||||||||| |
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| T |
20246607 |
ggaatgaccatcctttccttcataatttgacaaaattacattatgaggcttcaaatctttgtcggtcttaccaatcattttgagtaaggattgaggcatc |
20246706 |
T |
|
| Q |
119 |
aaattgacaacagcaccaccgtcgaccaacactttgttgataccaatctcatccactttggcttggatgaaca |
191 |
Q |
| |
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||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20246707 |
aaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaaca |
20246779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 117; E-Value: 8e-60
Query Start/End: Original strand, 19 - 191
Target Start/End: Original strand, 22140591 - 22140763
Alignment:
| Q |
19 |
ggaatgaccagtctttccttcataattagatagaattacattatgaggcttccactctctgtcgatgttaccaatccttttgagtaaggattgaggcatc |
118 |
Q |
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|||||||||| ||||||||||||||| || | ||||||||||||||||||| | ||| ||||| | ||||||||| ||||||||||||||||||||||| |
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| T |
22140591 |
ggaatgaccatcctttccttcataatttgacaaaattacattatgaggcttcaaatctttgtcggtcttaccaatcattttgagtaaggattgaggcatc |
22140690 |
T |
|
| Q |
119 |
aaattgacaacagcaccaccgtcgaccaacactttgttgataccaatctcatccactttggcttggatgaaca |
191 |
Q |
| |
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||||| ||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
22140691 |
aaatttacagcagcaccaccatcgaccaacactttgttgataccaatctcatccactttggcttggatgaaca |
22140763 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 99; Significance: 5e-49; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 99; E-Value: 5e-49
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 11885453 - 11885283
Alignment:
| Q |
21 |
aatgaccagtctttccttcataattagatagaattacattatgaggcttccactctctgtcgatgttaccaatccttttgagtaaggattgaggcatcaa |
120 |
Q |
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|
|||||| || ||||||||||||||| || ||||||||||||||| ||||| | ||| ||||| | || ||||||||||||||||||| ||||||||||| |
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| T |
11885453 |
aatgactagcctttccttcataatttgacagaattacattatgacgcttcaagtctttgtcggtcttgtcaatccttttgagtaaggactgaggcatcaa |
11885354 |
T |
|
| Q |
121 |
attgacaacagcaccaccgtcgaccaacactttgttgataccaatctcatccactttggcttggatgaaca |
191 |
Q |
| |
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||||||| ||||| |||||||||||||||||||||||| ||||||||||| ||||||||||||||||||| |
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| T |
11885353 |
attgacagtagcacaaccgtcgaccaacactttgttgatgccaatctcatctactttggcttggatgaaca |
11885283 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 125 - 189
Target Start/End: Complemental strand, 18474107 - 18474043
Alignment:
| Q |
125 |
acaacagcaccaccgtcgaccaacactttgttgataccaatctcatccactttggcttggatgaa |
189 |
Q |
| |
|
||||||||||| || || ||||| |||||||||| |||||||| || ||||||||||| ||||| |
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|
| T |
18474107 |
acaacagcaccgccatctaccaatactttgttgactccaatctcgtcaactttggcttgaatgaa |
18474043 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 97; Significance: 7e-48; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 97; E-Value: 7e-48
Query Start/End: Original strand, 19 - 191
Target Start/End: Complemental strand, 24988373 - 24988201
Alignment:
| Q |
19 |
ggaatgaccagtctttccttcataattagatagaattacattatgaggcttccactctctgtcgatgttaccaatccttttgagtaaggattgaggcatc |
118 |
Q |
| |
|
||||||||||| ||||||| ||||||| ||| ||||||||||||||||||| | ||| ||||| | || ||||||||||| |||| ||||||||||||| |
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| T |
24988373 |
ggaatgaccagcctttcctacataatttgattgaattacattatgaggcttaaaatctttgtcggtcttgccaatccttttaagtagggattgaggcatc |
24988274 |
T |
|
| Q |
119 |
aaattgacaacagcaccaccgtcgaccaacactttgttgataccaatctcatccactttggcttggatgaaca |
191 |
Q |
| |
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| ||||||| |||||||||| ||| |||||||||||||||||||||| ||||||||||||||||| ||||||| |
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| T |
24988273 |
agattgacagcagcaccaccatcgcccaacactttgttgataccaatatcatccactttggcttgaatgaaca |
24988201 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 21 - 191
Target Start/End: Complemental strand, 25567333 - 25567163
Alignment:
| Q |
21 |
aatgaccagtctttccttcataattagatagaattacattatgaggcttccactctctgtcgatgttaccaatccttttgagtaaggattgaggcatcaa |
120 |
Q |
| |
|
|||||||| ||||||||||||| | || | ||||| ||||||||||||| | | | ||||| | || |||| | |||||||||||||||||||||||| |
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| T |
25567333 |
aatgaccaccctttccttcataactcgacataattagattatgaggcttcaaatttttgtcggtctttccaacctttttgagtaaggattgaggcatcag |
25567234 |
T |
|
| Q |
121 |
attgacaacagcaccaccgtcgaccaacactttgttgataccaatctcatccactttggcttggatgaaca |
191 |
Q |
| |
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||| |||||| ||||||||||||||||||||||||| ||| || |||||||||||||| ||||||||||| |
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| T |
25567233 |
attaacaacatcaccaccgtcgaccaacactttgttaataataacctcatccactttggattggatgaaca |
25567163 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 91; Significance: 3e-44; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 91; E-Value: 3e-44
Query Start/End: Original strand, 21 - 191
Target Start/End: Original strand, 4598842 - 4599012
Alignment:
| Q |
21 |
aatgaccagtctttccttcataattagatagaattacattatgaggcttccactctctgtcgatgttaccaatccttttgagtaaggattgaggcatcaa |
120 |
Q |
| |
|
||||||||| ||||||||||||||| || ||||| ||| ||||||||||| | || |||| | || ||||||||||||||||| ||||||||||||| |
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| T |
4598842 |
aatgaccagcctttccttcataatttgacagaatcacagtatgaggcttcaaatcattgtcagtcttgccaatccttttgagtaaagattgaggcatcat |
4598941 |
T |
|
| Q |
121 |
attgacaacagcaccaccgtcgaccaacactttgttgataccaatctcatccactttggcttggatgaaca |
191 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||| | ||| ||||||| |||||||||||||||||||| |
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| T |
4598942 |
attgacagcagcaccaccgtcgaccaacactttgttaacaccgatctcattcactttggcttggatgaaca |
4599012 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 52 - 191
Target Start/End: Complemental strand, 18218442 - 18218303
Alignment:
| Q |
52 |
aattacattatgaggcttccactctctgtcgatgttaccaatccttttgagtaaggattgaggcatcaaattgacaacagcaccaccgtcgaccaacact |
151 |
Q |
| |
|
|||||| |||||||| ||| | ||| ||||| | || |||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||| |
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| T |
18218442 |
aattacgttatgaggtttcaaatctttgtcggtcttgtcaatccttttgagtaaggattgaggcatcagattgacagcagtgccaccgtcgaccaacact |
18218343 |
T |
|
| Q |
152 |
ttgttgataccaatctcatccactttggcttggatgaaca |
191 |
Q |
| |
|
||||| | |||||||||||||||||||||||||||||||| |
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|
| T |
18218342 |
ttgttaacaccaatctcatccactttggcttggatgaaca |
18218303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 109 - 183
Target Start/End: Original strand, 20862859 - 20862933
Alignment:
| Q |
109 |
ttgaggcatcaaattgacaacagcaccaccgtcgaccaacactttgttgataccaatctcatccactttggcttg |
183 |
Q |
| |
|
|||||| |||| ||||||| || ||||||| || |||||||| ||||||| ||||| ||||| ||||||||||| |
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|
| T |
20862859 |
ttgaggtatcagattgacagcaacaccaccatctaccaacaccttgttgactccaatatcatcaactttggcttg |
20862933 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 89; Significance: 4e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 89; E-Value: 4e-43
Query Start/End: Original strand, 31 - 191
Target Start/End: Original strand, 2283951 - 2284111
Alignment:
| Q |
31 |
ctttccttcataattagatagaattacattatgaggcttccactctctgtcgatgttaccaatccttttgagtaaggattgaggcatcaaattgacaaca |
130 |
Q |
| |
|
||||||||||||||| || | ||| |||||||| |||||| | ||| ||||| | |||||||||||||||||||||||||||||||||| ||||||| | |
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|
| T |
2283951 |
ctttccttcataattcgacaaaatcacattatgcggcttcaaatctttgtcggtcttaccaatccttttgagtaaggattgaggcatcagattgacagcg |
2284050 |
T |
|
| Q |
131 |
gcaccaccgtcgaccaacactttgttgataccaatctcatccactttggcttggatgaaca |
191 |
Q |
| |
|
|||||||||||||||||||||||||| | |||||||||||||||||| ||||||||||| |
|
|
| T |
2284051 |
gcaccaccgtcgaccaacactttgttaacaccaatctcatccactttattttggatgaaca |
2284111 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0059 (Bit Score: 78; Significance: 2e-36; HSPs: 1)
Name: scaffold0059
Description:
Target: scaffold0059; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 86 - 187
Target Start/End: Original strand, 34664 - 34765
Alignment:
| Q |
86 |
ttaccaatccttttgagtaaggattgaggcatcaaattgacaacagcaccaccgtcgaccaacactttgttgataccaatctcatccactttggcttgga |
185 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||| ||| |||||||||||||||||||||||||||||||||||||||| | |||| |||||| |
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|
| T |
34664 |
ttaccaatccttttgagtaaggattgatgcatcaaattgacgacaacaccaccgtcgaccaacactttgttgataccaatctcatctagtttgccttgga |
34763 |
T |
|
| Q |
186 |
tg |
187 |
Q |
| |
|
|| |
|
|
| T |
34764 |
tg |
34765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0142 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0142
Description:
Target: scaffold0142; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 101 - 189
Target Start/End: Original strand, 15539 - 15627
Alignment:
| Q |
101 |
agtaaggattgaggcatcaaattgacaacagcaccaccgtcgaccaacactttgttgataccaatctcatccactttggcttggatgaa |
189 |
Q |
| |
|
||||| ||||||||||||||||||||| || ||||||| || ||||||| |||||||| | ||| ||||| |||||| |||| ||||| |
|
|
| T |
15539 |
agtaaagattgaggcatcaaattgacagcaacaccaccatctaccaacaatttgttgactctaatatcatcaactttgacttgaatgaa |
15627 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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