View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_11 (Length: 623)
Name: NF16068_low_11
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_11 |
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Alignment Details
Target: chr5 (Bit Score: 524; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 524; E-Value: 0
Query Start/End: Original strand, 1 - 613
Target Start/End: Original strand, 40181461 - 40182079
Alignment:
| Q |
1 |
gtatttcttccttagtttaacattaaaatcatagtgaacagcagtgcttattgattcaacaagatattccacaacatgggaatcgctgagatccttttta |
100 |
Q |
| |
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|||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||| |||||||||| ||| |
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| T |
40181461 |
gtatttcttccttagtttaacattgaaatcatagtgaacagtagtgcttattgattcaacaagatattccaaaacatgggtatcgatgagatccttatta |
40181560 |
T |
|
| Q |
101 |
tccttcctatgcatctttatgaagtatataagattctgaggtggtacttttagggtttcagctaatttagtttgacaagaggtttcaataactttgatta |
200 |
Q |
| |
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||||||| | |||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
40181561 |
tccttccaaagcatctttatgaagtatataagattctgaggtggaacttctagggtttcagctaatttagtttgacaagaggtttcaataacactgatta |
40181660 |
T |
|
| Q |
201 |
gaaagttttgttgatgatgttgaactagattggtcaagtctttgttgtacctgcgcccacgtgtagaagcattactaagaagactcatcactttctggaa |
300 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40181661 |
gaaagtgttgttgatgatgttgaactagattggtcaagtctttgttgtacctgcgcccacgtgtagaagcattactaagaagactcatcactttctgtaa |
40181760 |
T |
|
| Q |
301 |
atctttggaggcggtgatgacgttgtcgtcgttgtcacgatatgtaaacgagggattacatgaagtggatgatgatgatgattgacttagaaagttggag |
400 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40181761 |
atctttggaggcggtgatgacgttgtcgtcgttgtcacgatatgtaaacgagggattacatgaagtggatgatgatgatgattgacttagaaagttggag |
40181860 |
T |
|
| Q |
401 |
aaaatgaccttgttagggttaggaattcttcgtgtggatgatgatgaggag------gaagaagaagaagtgatgtagttcctgccatatcttgctgcaa |
494 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40181861 |
aaaatgaccttgttagggttaggaattcttcgtgtggatgatgataaggaggaagaagaagaagaagaagtgatgtagttcctgccatatcttgctgcaa |
40181960 |
T |
|
| Q |
495 |
acgacacccacatcttcttatatatagtttgcgagtgagaatcggttggagacaaacggcacacacacggctaggtttaggtttactgagcgattgagaa |
594 |
Q |
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|
||||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40181961 |
acgacacccacatctgcatatatatagtttgcgagtgagaatcggttggagacagacggcacacacacggctaggtttaggtttactgagcgattgagaa |
40182060 |
T |
|
| Q |
595 |
tgttgaactctaacctatg |
613 |
Q |
| |
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||||||||||||||||||| |
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| T |
40182061 |
tgttgaactctaacctatg |
40182079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 38606068 - 38606137
Alignment:
| Q |
128 |
ataagattctgaggtggtacttttagggtttcagctaatttagtttgacaagaggtttcaataactttga |
197 |
Q |
| |
|
||||| || ||||||| ||| ||| |||||| | ||||||| |||||||||||||||| ||||||||||| |
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| T |
38606068 |
ataaggttgtgaggtgatacctttggggtttgaactaatttggtttgacaagaggtttgaataactttga |
38606137 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 155 - 216
Target Start/End: Original strand, 40180938 - 40180999
Alignment:
| Q |
155 |
gtttcagctaatttagtttgacaagaggtttcaataactttgattagaaagttttgttgatg |
216 |
Q |
| |
|
|||||| | |||||||||||||||||||||| ||||||||||| || ||| | ||||||||| |
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|
| T |
40180938 |
gtttcaacaaatttagtttgacaagaggttttaataactttgagtaaaaaatgttgttgatg |
40180999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 268 - 303
Target Start/End: Original strand, 38606229 - 38606264
Alignment:
| Q |
268 |
agcattactaagaagactcatcactttctggaaatc |
303 |
Q |
| |
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||||||||||||||||||||||||||| |||||||| |
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| T |
38606229 |
agcattactaagaagactcatcactttatggaaatc |
38606264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 44459351 - 44459244
Alignment:
| Q |
115 |
ctttatgaagtatataagattctgaggtggtacttttagggtttcagctaatttagtttgacaagaggtttcaataactttgattagaaagttttgttga |
214 |
Q |
| |
|
|||||| |||| |||||||| |||||| | || ||| ||| |||| | |||||||||||||||||||||||||||||||| | | ||||| |||||| |
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|
| T |
44459351 |
ctttataaagttgataagattatgaggttgaacctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgt |
44459252 |
T |
|
| Q |
215 |
tgatgttg |
222 |
Q |
| |
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|||||||| |
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|
| T |
44459251 |
tgatgttg |
44459244 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 115 - 222
Target Start/End: Complemental strand, 44466884 - 44466777
Alignment:
| Q |
115 |
ctttatgaagtatataagattctgaggtggtacttttagggtttcagctaatttagtttgacaagaggtttcaataactttgattagaaagttttgttga |
214 |
Q |
| |
|
|||||| |||| |||||||| |||||| | || ||| ||| |||| | |||||||||||||||||||||||||||||||| | | ||||| |||||| |
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|
| T |
44466884 |
ctttataaagttgataagattatgaggttgaacctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttgt |
44466785 |
T |
|
| Q |
215 |
tgatgttg |
222 |
Q |
| |
|
|||||||| |
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|
| T |
44466784 |
tgatgttg |
44466777 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 128 - 197
Target Start/End: Original strand, 34502619 - 34502688
Alignment:
| Q |
128 |
ataagattctgaggtggtacttttagggtttcagctaatttagtttgacaagaggtttcaataactttga |
197 |
Q |
| |
|
|||||||| ||||| | || ||| ||||||||| ||||||||||||| |||||| |||||||||||||| |
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| T |
34502619 |
ataagattatgaggcgaaacctttggggtttcagttaatttagtttgagaagaggcttcaataactttga |
34502688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 44459176 - 44459145
Alignment:
| Q |
272 |
ttactaagaagactcatcactttctggaaatc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
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|
| T |
44459176 |
ttactaagaagactcatcactttctggaaatc |
44459145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 272 - 303
Target Start/End: Complemental strand, 44466709 - 44466678
Alignment:
| Q |
272 |
ttactaagaagactcatcactttctggaaatc |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |
|
|
| T |
44466709 |
ttactaagaagactcatcactttctggaaatc |
44466678 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 38; Significance: 0.000000000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 115 - 216
Target Start/End: Complemental strand, 46358922 - 46358821
Alignment:
| Q |
115 |
ctttatgaagtatataagattctgaggtggtacttttagggtttcagctaatttagtttgacaagaggtttcaataactttgattagaaagttttgttga |
214 |
Q |
| |
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|||||| |||| |||||||| |||||| | || ||| ||| |||| | |||||||||||||||||||||||||||||||| | | ||||| ||||||| |
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| T |
46358922 |
ctttataaagttgataagattatgaggttgaacctttggggcttcaacaaatttagtttgacaagaggtttcaataactttaagtgcaaagtgttgttga |
46358823 |
T |
|
| Q |
215 |
tg |
216 |
Q |
| |
|
|| |
|
|
| T |
46358822 |
tg |
46358821 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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