View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_12 (Length: 619)
Name: NF16068_low_12
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_12 |
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Alignment Details
Target: chr7 (Bit Score: 565; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 565; E-Value: 0
Query Start/End: Original strand, 12 - 604
Target Start/End: Original strand, 30547857 - 30548449
Alignment:
| Q |
12 |
catcatcatcctcgagacgcttaagagctctaccaattttcctatcacattcaccaataagcttatctataacatcctccaactctctttcgtaactatc |
111 |
Q |
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| T |
30547857 |
catcatcatcctcaagacgcttaagagctctaccaattttcctatcacattcaccaataagcttatctataacatcctccaactctctttcgtaactatc |
30547956 |
T |
|
| Q |
112 |
ggtgcctttggatttggcttcctcgtatctaaaaaacagttaagcaaacaccactatccaaaatccaaaactagaataaccgcaacattgaattgaattg |
211 |
Q |
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| T |
30547957 |
tgtgcctttggatttggcttcctcgtatctaaaaaacagttaagcaaacaccactatccaaaatccaaaactagaataaccgcaacattgaattgaattg |
30548056 |
T |
|
| Q |
212 |
aaatgaattaaagtatgtattatagttagatcgtgaaggatactcttttctgagctgtaatgagtgaaccttagggcaaggacccatatccattttctga |
311 |
Q |
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|| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
30548057 |
aattgaattaaagtatgtattatagttagatcgtgaaggatactcttttctgagctgcaatgagtgaaccttagggcaaggacccatatccattttctga |
30548156 |
T |
|
| Q |
312 |
aacgaatgaataaagattaaaacctaagtaagcgtaacagaatggagggagagagaggtgaaaaagaattaccgttagttgaaagagttcgtgggggcaa |
411 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
30548157 |
aacgaatgaataaagattaaaacctaagtaagcgtaacagaatggagggagagagaggtgaaaaagaattaccgttaattgaaagagttcgtgggggcaa |
30548256 |
T |
|
| Q |
412 |
agaccgacgagataaagacggcaaacatcgcgatcgtaatacttgcggttaacttcacggacgtcgccgttacgattggctcccatgagaacgtccagtt |
511 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30548257 |
agaccgacgagataaagacggcaaacatcgcgatcgtaatacttgcggttaacttcacggacgtcgccgttacgattggctcccatgagaacgtccagtt |
30548356 |
T |
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| Q |
512 |
gcttccgtatagcatccattgttttcgatctggaacagaactgaactcgatggaacttgtgtttcttgagtttatgagtttagggttagatct |
604 |
Q |
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| T |
30548357 |
gcttccgtatggcatccattgttttcgatctggaacagaactgaactcgatggaacttgtgtttgttgagtttatgagtttagggttagatct |
30548449 |
T |
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