View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_13 (Length: 562)
Name: NF16068_low_13
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_13 |
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Alignment Details
Target: chr7 (Bit Score: 490; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 490; E-Value: 0
Query Start/End: Original strand, 1 - 548
Target Start/End: Complemental strand, 40750014 - 40749467
Alignment:
| Q |
1 |
tgcatgtggactaaactgttgaagtttttgaagtccttgagatgatatcaatccatgggccaaactagtttgtatgttcatcatattggactcttcattc |
100 |
Q |
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| T |
40750014 |
tgcatgtggactaaattgttgaatattttgaagtccttgagatgatatcaatccatgggccaaactagtttgtgtgttcatcatattggactcttcattc |
40749915 |
T |
|
| Q |
101 |
tggaaatttagagttgtaggagatgagtgtcttgcactttctacggctaatgcgtcgcagaaagctctgtgtgtaataaagctatccttcctgtgaaata |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40749914 |
tggaaatttagagttgtaggagatgagtgtcttgcactttctacggctaatgcgtcgcagaaagctctgtgtgtaataaagctatccttcctgtgaaata |
40749815 |
T |
|
| Q |
201 |
aaatgtaccattagaaacctaatcatttacactatgcagtagtactagatcattgtcataatttgtgaataattaaattatgaggaagtatgcattaaat |
300 |
Q |
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| T |
40749814 |
aaatgtaccattagaaacctaatcatttacactatgcagtagtactagatcattgtcttaatttgtgaataattaaattatgaggaagtatgcattaaat |
40749715 |
T |
|
| Q |
301 |
tcatacataatgcaaatgagaagtaattgaaaagaaaaacagttttttcatccacatcaaaaacaataaattttcagaaacttctttatttataaaaaat |
400 |
Q |
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| T |
40749714 |
tcatacataatgcaaatgagaagtaattgaaaagaaaaacagttttttcatccacatcaaaaacaagaaattttcagaaacttctttatttataaaaaat |
40749615 |
T |
|
| Q |
401 |
cagtatgaaggaattgaatgtttaaatttgcatgactttggtctttgaaaccaaagtcacctaaattttttgatactnnnnnnnnnngtgaattgaatta |
500 |
Q |
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| T |
40749614 |
cagtatgaaggaattgaatgtttaaatttgcatgactttggtctttgaaaccaaagtcacctaaatttttttatactaaaaaaaaaagtgaattgaatta |
40749515 |
T |
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| Q |
501 |
ccttgagaagagtgtaccacaatcacacttatattctctagtaccaca |
548 |
Q |
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| T |
40749514 |
ccttgagaagagtgtaccacaatcacacttatattctctagtaccaca |
40749467 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 514 - 552
Target Start/End: Original strand, 31644073 - 31644111
Alignment:
| Q |
514 |
gtaccacaatcacacttatattctctagtaccacaggtt |
552 |
Q |
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| T |
31644073 |
gtaccacaatcacatttatattctcgagtaccacaggtt |
31644111 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 498 - 548
Target Start/End: Complemental strand, 42287244 - 42287194
Alignment:
| Q |
498 |
ttaccttgagaagagtgtaccacaatcacacttatattctctagtaccaca |
548 |
Q |
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|||||| |||||||| || ||||||||||| ||||||||||||||||||| |
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| T |
42287244 |
ttacctagagaagagggtgccacaatcacatctatattctctagtaccaca |
42287194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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