View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16068_low_16 (Length: 534)
Name: NF16068_low_16
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_16 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 463; Significance: 0; HSPs: 9)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 463; E-Value: 0
Query Start/End: Original strand, 14 - 500
Target Start/End: Original strand, 2098158 - 2098644
Alignment:
| Q |
14 |
gataattctgagcaatgacacgatttctttgttaaaacaaccatggaactatccccttcctagacaaaagaaaggcttctctgaattcatttagtttcat |
113 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
2098158 |
gataattctgagcgatgacacgatttctttgttaaaacaaccatggaactatccccttcctagaaaaaagaaaggcttctctgaattcatttagtttcat |
2098257 |
T |
|
| Q |
114 |
attcttcctaattggttagatattgttaagatttactcaccaccactcttcattgtttatacatttttcttttctaaacaatttaccaacatatgttatt |
213 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2098258 |
attcttcctaattggttagatattgttaagatttactcaccactactcttcattgtttatacatttttcttttctaaacaatttaccaacatatgttatt |
2098357 |
T |
|
| Q |
214 |
gttttgcaacagctgaaaggtttatggaacatcaacaatgctcatttaaggaacttatgcaatgaggccttggagctaagggataactttcacttgttca |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2098358 |
gttttgcaacagctgaaaggtttatggaacatcaacaatgctcatttaaggaacttatgcaatgaggccttggagctaagggataactttcacttgttca |
2098457 |
T |
|
| Q |
314 |
gcatcttttacattcctagggtatttatttaagttgctcctttctcaattgagcattgctttgtgaagttgaaaacatctagattggaatttaggaatca |
413 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
2098458 |
gcatcttttacattcctagggtatttatttaagttgctcctttctcaattgagcattgctttgtgaagttggaaacatctagattggaatttaggaatca |
2098557 |
T |
|
| Q |
414 |
tcttgatcatactttatcttatgattttttatttcacaggcttgtctacaaaggaagtcatgtgatctaatttcttgaataactaaa |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2098558 |
ccttgatcatactttatcttatgattttttatttcacaggcttgtctacaaaggaagtcatgtgatctaattgcttgaataactaaa |
2098644 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 14 - 433
Target Start/End: Original strand, 2106612 - 2107057
Alignment:
| Q |
14 |
gataattctgagcaatgacacgatttctttgtt-aaaacaaccatggaactatccccttcct----agacaaaagaaaggcttctctgaattcatttagt |
108 |
Q |
| |
|
||||||||| ||| |||||| |||||||||||| |||||||| ||||||||||||| ||| | | | |||| ||||||| || |||||||||||||| |
|
|
| T |
2106612 |
gataattctaagcgatgacatgatttctttgttaaaaacaactatggaactatccctttcttaaaaaaaaaaaaaaaaggctcctttgaattcatttagt |
2106711 |
T |
|
| Q |
109 |
ttcatattc-ttcctaattggttagatattgttaagatttactcaccaccactcttcattgtttatacatttttcttttctaaacaatttaccaacatat |
207 |
Q |
| |
|
|| |||| | ||||||||||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2106712 |
tttatatcctttcctaattggttagatattgttaagatttactcattgctactcttcattttttatacatttttcttttctaaacaatttaccaac--at |
2106809 |
T |
|
| Q |
208 |
gttattgttttgcaacagctgaaaggtttatggaacatcaacaatgctcatttaaggaacttatgcaatgaggccttggagctaagggataactttcact |
307 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
2106810 |
gttattgttttgcaacagttgaaaggtttatggaacatcaacaatgcttatttaaggaacttatgcaatgaggctttggagctaagggataactttcact |
2106909 |
T |
|
| Q |
308 |
tgttcagcatcttttacattcctagggtattta----------------------tttaagttgctcctttctcaattgagcattgctttgtgaagttga |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||| || |||||||||| |||||||||||||||| |||||||||||||||| |
|
|
| T |
2106910 |
tgttcagcatcttttacattcctagggtatatatttagcaatttgttctattatgtttaagttgcatctttctcaattgagcactgctttgtgaagttga |
2107009 |
T |
|
| Q |
386 |
aaacatctagattggaatttaggaatcatcttgatcatactttatctt |
433 |
Q |
| |
|
||||| ||||||||||||| || ||||| |||||||||||||||||| |
|
|
| T |
2107010 |
aaacaattagattggaatttggggatcattttgatcatactttatctt |
2107057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 368 - 509
Target Start/End: Original strand, 2083205 - 2083347
Alignment:
| Q |
368 |
attgctttgtgaagttgaaaacatctagattggaatttaggaatcatcttgatcatactttatcttatga-ttttttatttcacaggcttgtctacaaag |
466 |
Q |
| |
|
||||||||||| ||||||||||| || ||||| |||| ||||||| ||||||||||||| |||| ||| ||||||| || || || |||||||||| |
|
|
| T |
2083205 |
attgctttgtggagttgaaaacaattacattggtatttgagaatcattttgatcatactttttcttgtgatttttttaatttgcatgcctgtctacaaaa |
2083304 |
T |
|
| Q |
467 |
gaagtcatgtgatctaatttcttgaataactaaaactagtata |
509 |
Q |
| |
|
||||||||||||| || | |||||||||||||| |||||||| |
|
|
| T |
2083305 |
aaagtcatgtgatccaaatgcttgaataactaaatctagtata |
2083347 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 175 - 307
Target Start/End: Original strand, 2088541 - 2088674
Alignment:
| Q |
175 |
catttttcttttctaaacaatttaccaacatatgttattg-ttttgcaacagctgaaaggtttatggaacatcaacaatgctcatttaaggaacttatgc |
273 |
Q |
| |
|
||||||||||||||||||||| ||| || ||||||||||| ||||||||||| | || |||| ||| |||||| ||||||| ||||||||| |||||| |
|
|
| T |
2088541 |
catttttcttttctaaacaatatactaagatatgttattggttttgcaacagtttaagggttcatgtaacatctacaatgcaaatttaaggagcttatgt |
2088640 |
T |
|
| Q |
274 |
aatgaggccttggagctaagggataactttcact |
307 |
Q |
| |
|
|| ||||| |||||||| | || | ||||||||| |
|
|
| T |
2088641 |
aacgaggctttggagctgaagggtgactttcact |
2088674 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 112 - 152
Target Start/End: Original strand, 2047859 - 2047899
Alignment:
| Q |
112 |
atattcttcctaattggttagatattgttaagatttactca |
152 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
2047859 |
atattcttcctaattggttagatattgttaatatttactca |
2047899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 225
Target Start/End: Original strand, 2065558 - 2065606
Alignment:
| Q |
178 |
ttttcttttctaaacaatttaccaacatatgtta-ttgttttgcaacag |
225 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
2065558 |
ttttctttgctaaacaatttaccaacatatgttatttgttttgcaacag |
2065606 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 79 - 137
Target Start/End: Original strand, 2082854 - 2082911
Alignment:
| Q |
79 |
aaaagaaaggcttctctgaattcatttagtttcatattcttcctaattggttagatatt |
137 |
Q |
| |
|
|||||||||| |||| || |||||||||||| ||||||| ||||||||||||||||||| |
|
|
| T |
2082854 |
aaaagaaaggtttctttggattcatttagtt-catattcatcctaattggttagatatt |
2082911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 236 - 307
Target Start/End: Original strand, 2048154 - 2048225
Alignment:
| Q |
236 |
tatggaacatcaacaatgctcatttaaggaacttatgcaatgaggccttggagctaagggataactttcact |
307 |
Q |
| |
|
||||||| |||||||| | | |||||||||||||||| ||||||| ||||||||| ||||||||||||| |
|
|
| T |
2048154 |
tatggaaaatcaacaacccgcgtttaaggaacttatgcgatgaggctttggagctagcagataactttcact |
2048225 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 169 - 225
Target Start/End: Complemental strand, 2135553 - 2135497
Alignment:
| Q |
169 |
tttatacatttttcttttctaaacaatttaccaacatatgttattgttttgcaacag |
225 |
Q |
| |
|
||||| |||||||||||| ||||||||||| |||||||||||| |||||||||| |
|
|
| T |
2135553 |
tttatgcatttttcttttttaaacaatttaggcgcatatgttattgctttgcaacag |
2135497 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University