View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16068_low_17 (Length: 523)
Name: NF16068_low_17
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_17 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 166 - 507
Target Start/End: Complemental strand, 52996918 - 52996568
Alignment:
| Q |
166 |
gtagttttatatatcaagtaaattgaaatacaaagtaatatcaattatagtaccacattcctttaaagtaattttttattaacttctttattttt-gtgt |
264 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||| |
|
|
| T |
52996918 |
gtagttttatatatcaagtaaattgaaatacaaagtaatatcaattatagtaccacattcctttaaagtaattttttattaacttcttttttttttgtgt |
52996819 |
T |
|
| Q |
265 |
gaaaccatctactatttattttccgtttcta--------caattacaatggatttatctttagatacgggttggactcatgaaagacaaagcttcaaatt |
356 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52996818 |
gaaaccatctactatttattttccgtttctagtagtgtacaattacaatggatttatctttagatacgggttggactcatgaaagacaaagcttcaaatt |
52996719 |
T |
|
| Q |
357 |
tgagtttccatgtgaatgtgttcggtgaagcaatcaaagaaagcaatattgattgtaatttagtttgggtttttatttattgaaataatgatgaaaataa |
456 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52996718 |
tgagtttccatgtgaatgtgttcagtgaagcaatcaaagaaagcaatattgattgtaatttagtttgggtttttatttattgaaataatgatgaaaataa |
52996619 |
T |
|
| Q |
457 |
catggaaaatgtggattcatatgtggattccattattcatgtgggatgatc |
507 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
52996618 |
catggaaaatgtggattcatatgtggattccattattcatgtgggatgatc |
52996568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University