View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16068_low_21 (Length: 486)
Name: NF16068_low_21
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_21 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 11 - 469
Target Start/End: Original strand, 1035751 - 1036199
Alignment:
| Q |
11 |
tccaagaatattgcattggaaaattcaacttcaactctatctaacgacatcactggtaatgacaaagagaaatttcttgacggacttttagtttcaggat |
110 |
Q |
| |
|
||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
1035751 |
tccaaaaatattgcattggaaaattcaacttcaa---tatctaacgacatcactggtaatgacaaagagaaatttcttgatggacttttagtttcaggat |
1035847 |
T |
|
| Q |
111 |
ttgatgaatcatcatgcataagcaggtcacaatctcatcatttctac-acaaaccttctccatatttgttatctaaacttcaaaagtatgaagaaaatca |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
1035848 |
ttgatgaatcatcatgcataagcaggtcacaatctcat---ttctaccacaaaccttctccatatttgttatctaaacttggaaagtatgaagaaaatca |
1035944 |
T |
|
| Q |
210 |
tagaaaatgtggaccaaacactagagctttcaacgaagacatgaaaattattgcaaaatataaggaaaatggtactgattgtgctgcaa-----aaacaa |
304 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
|
|
| T |
1035945 |
tagaaaatgtggaccaaacactagagctttcaacgaagacatgaaaattattgcaaaatataaggaaaatggtactgattgtgctgcaaaaattaaacaa |
1036044 |
T |
|
| Q |
305 |
catgcaaatacattatttggttaccagcaaatgggttaggtaaccaaataattagcatggcttcatcatttctttacgcgatgctaacggatcgcgttat |
404 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1036045 |
catgcaaatacattattttgttaccagcaaatgggttaggtaaccaaataattaccgcggcttcatcatttctttacgcgatgctaacggatcgcgttat |
1036144 |
T |
|
| Q |
405 |
gcctgtacaatttgggaaagacaaagaaggtttattttgtgaaccattttttaattcaacttggt |
469 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
1036145 |
----------tttgggaaagacaaagaaggtttattttgtgaaccatttttgaattcaacttggt |
1036199 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 307 - 469
Target Start/End: Original strand, 1010990 - 1011152
Alignment:
| Q |
307 |
tgcaaatacattatttggttaccagcaaatgggttaggtaaccaaataattagcatggcttcatcatttctttacgcgatgctaacggatcgcgttatgc |
406 |
Q |
| |
|
||||||||| |||||||| |||||| ||||| ||||| |||||||| ||||||||||| || ||||| | || || | || || | || ||||||| |
|
|
| T |
1010990 |
tgcaaataccttatttggacaccagctaatggtttaggaaaccaaatggttagcatggctgcaacatttatgtatgctctcctcacaaaccgtgttatgc |
1011089 |
T |
|
| Q |
407 |
ctgtacaatttgggaaagacaaagaaggtttattttgtgaaccattttttaattcaacttggt |
469 |
Q |
| |
|
||| ||| ||||||||||| ||||| |||||||||| || ||||| ||||||||||||| |
|
|
| T |
1011090 |
tcgtaagattcaggaaagacaaacaaggtatattttgtgagccttttttgaattcaacttggt |
1011152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 172; Significance: 3e-92; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 172; E-Value: 3e-92
Query Start/End: Original strand, 11 - 469
Target Start/End: Complemental strand, 6939093 - 6938628
Alignment:
| Q |
11 |
tccaagaatattgcattggaaaattcaacttcaactctatctaacgacatcactggtaatgacaaagagaaatttcttgacggacttttagtttcaggat |
110 |
Q |
| |
|
||||| |||||| ||||| ||||| ||||||||||| | | || || ||||||| | |||| ||||||||||| |||||||||||||||||||| |||| |
|
|
| T |
6939093 |
tccaaaaatatttcattgacaaatttaacttcaactccaccaaaagagatcactgatgatgagaaagagaaattgcttgacggacttttagtttctggat |
6938994 |
T |
|
| Q |
111 |
ttgatgaatcatcatgcataagcaggtcacaatctcat-------------catttctacacaaaccttctccatatttgttatctaaacttcaaaagta |
197 |
Q |
| |
|
|||||||| ||||||| ||||||||| |||||||||| ||| || ||||||||||||||||||||| |||||||||| ||| || |
|
|
| T |
6938993 |
ttgatgaagcatcatgtgtaagcaggttacaatctcatttctatcacaaaccatctcctcacaaaccttctccatatttgatatctaaactaagaaaata |
6938894 |
T |
|
| Q |
198 |
tgaagaaaatcatagaaaatgtggaccaaacactagagctttcaacgaagacatgaaaattattgcaaaatataaggaaaatggtactgattgtgctgca |
297 |
Q |
| |
|
||||||| |||||||| |||||||| ||||||||||||| ||| ||||||||||||| ||| |||||| |||| |||||||||| || |||||| |
|
|
| T |
6938893 |
tgaagaacttcatagaaggtgtggacctaacactagagcttacaatgaagacatgaaaaaaattacaaaatctaagaaaaatggtac---ttctgctgc- |
6938798 |
T |
|
| Q |
298 |
aaaacaacatgcaaatacattatttggttaccagcaaatgggttaggtaaccaaataattagcatggcttcatcatttctttacgcgatgctaacggatc |
397 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || ||| | ||||||| | |
|
|
| T |
6938797 |
--aacaacatgcaaatacattatttggttacctgcaaatggtttaggtaaccaaataattagcatggcttcatcatttctatatgcgctcctaacgggac |
6938700 |
T |
|
| Q |
398 |
gcgttatgcctgtacaatttgggaaagacaaagaaggtttattttgtgaaccattttttaattcaacttggt |
469 |
Q |
| |
|
| ||||||| ||||| ||||| ||||||||||||||||||||||| ||||||||| | ||||| ||||||| |
|
|
| T |
6938699 |
gtgttatgctcgtacagtttggaaaagacaaagaaggtttattttgcgaaccatttctgaattcgacttggt |
6938628 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University