View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_24 (Length: 454)
Name: NF16068_low_24
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_24 |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 178; Significance: 8e-96; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 178; E-Value: 8e-96
Query Start/End: Original strand, 277 - 454
Target Start/End: Complemental strand, 10102543 - 10102366
Alignment:
| Q |
277 |
gcttgtaaaccttttcatcaacaccctttgtttgatgattcttatcatgatacttggaagaccccagtgaagttgatatgtccattccatggcttccagc |
376 |
Q |
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| T |
10102543 |
gcttgtaaaccttttcatcaacaccctttgtttgatgattcttatcatgatacttggaagaccccagtgaagttgatatgtccattccatggcttccagc |
10102444 |
T |
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| Q |
377 |
atagtaaatatttttcaatttcacaaaatcataaacctacatgtcaaaagagaaatgaatgtcatgtaaatactagac |
454 |
Q |
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| T |
10102443 |
atagtaaatatttttcaatttcacaaaatcataaacctacatgtcaaaagagaaatgaatgtcatgtaaatactagac |
10102366 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 135; E-Value: 3e-70
Query Start/End: Original strand, 10 - 152
Target Start/End: Complemental strand, 10103111 - 10102969
Alignment:
| Q |
10 |
agaagcaaagggtacataaagaagtttgttcattttaagaacaaattaatgaataatattacctcttggatagttggtaaaaattcttctgctggatgat |
109 |
Q |
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| T |
10103111 |
agaaccaaagggtacataaagaagtttgttcattttaagaacaaattaatgaataatattacctcttggattgttggtaaaaattcttctgctggatgat |
10103012 |
T |
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| Q |
110 |
aaagtacaacttcattaccctaaaatacattatgagacgttaa |
152 |
Q |
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| T |
10103011 |
aaagtacaacttcattaccctaaaatacattatgagacgttaa |
10102969 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 3e-24
Query Start/End: Original strand, 156 - 221
Target Start/End: Complemental strand, 10102663 - 10102598
Alignment:
| Q |
156 |
ttatccttattgttatgtatgtctcaaacaagattgttctgataataagagaaatgtgaatttcat |
221 |
Q |
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| T |
10102663 |
ttattcttattgttatgtatgtctcaaacaagattgttatgataataagagaaatgtgaatttcat |
10102598 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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