View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_27 (Length: 442)
Name: NF16068_low_27
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_27 |
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Alignment Details
Target: chr3 (Bit Score: 310; Significance: 1e-174; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 95 - 428
Target Start/End: Complemental strand, 43764301 - 43763968
Alignment:
| Q |
95 |
tacctgtttcacattctccgcaatgtcactgtgttgccaaacatgcacagagtgacagagtcttaaagcctagcggggaatccaaagttgtgaaatgtct |
194 |
Q |
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| T |
43764301 |
tacctgtttcacattctccgcaatgtcactgtgttgccaaacatgcacagagtgacagagccttaaagcctagcggggaatccaaagttgtgaaatgtct |
43764202 |
T |
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| Q |
195 |
ttatggttccatcaaaactagctgcaacaactgatgatacccatgataaaacagtgataccgtacgtctggagtgaagctcgatccacctgtttcacatt |
294 |
Q |
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| T |
43764201 |
ttacggttccatcaaaactagctgcaacaactgatggtacccatgataaaacagtgataccgtaagtctggagtgaagctcgatccacctgtttcacatt |
43764102 |
T |
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| Q |
295 |
caccgcaatgtcactgtattaccaaacatgcagagttgccatgagtgacagagtcttaaagcctcggaggaaatccaaagttgtgaaatgtcttgatcgt |
394 |
Q |
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| T |
43764101 |
caccgcaatgtcactgtattaccaaacatgcagagttgccatgagagacagagtcttaaagcctcgcaggaaatccaaagttgtgaaatgtcttgatcgt |
43764002 |
T |
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| Q |
395 |
tccatcaagacctgctgcaacaactgatagtccc |
428 |
Q |
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| T |
43764001 |
tccatcaagacctgctgcaacaactgatagtccc |
43763968 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 151; E-Value: 1e-79
Query Start/End: Original strand, 18 - 255
Target Start/End: Complemental strand, 43764542 - 43764298
Alignment:
| Q |
18 |
ctttgaattcgagggattgtaaatttggaaaccaacaatataatggtgatgatgcatgtctggagtgaagctcaatctacctgtttcacattctccgcaa |
117 |
Q |
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| T |
43764542 |
ctttgaattcgagggattgtaaatttggaaaccaacaatataatggtgatgatgcatgtctggagtgaagctcaatctacctgtttcacattctccgcaa |
43764443 |
T |
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| Q |
118 |
tgtcactgtgttgccaaacatgcaca----------gagtgacagagtcttaaagcctagcggggaatccaaagttgtgaaatgtctttatggttccatc |
207 |
Q |
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| T |
43764442 |
tgtcactgtgttaccaaacatgcacagagttgtcatgagtgatagagtcttaaagc---gcagggaatccaaagttgttaaatgtcttgatggttccatc |
43764346 |
T |
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| Q |
208 |
aaaactagctgcaacaactgatgatacccatgataaaacagtgatacc |
255 |
Q |
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| T |
43764345 |
aagaccagctgcaacaactgatagttcccatgataaaacggttatacc |
43764298 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 260 - 425
Target Start/End: Complemental strand, 43764485 - 43764321
Alignment:
| Q |
260 |
gtctggagtgaagctcgatccacctgtttcacattcaccgcaatgtcactgtattaccaaacatg--cagagttgccatgagtgacagagtcttaaagcc |
357 |
Q |
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| T |
43764485 |
gtctggagtgaagctcaatctacctgtttcacattctccgcaatgtcactgtgttaccaaacatgcacagagttgtcatgagtgatagagtcttaaag-- |
43764388 |
T |
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| Q |
358 |
tcggaggaaatccaaagttgtgaaatgtcttgatcgttccatcaagacctgctgcaacaactgatagt |
425 |
Q |
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| T |
43764387 |
-cgcagggaatccaaagttgttaaatgtcttgatggttccatcaagaccagctgcaacaactgatagt |
43764321 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 75 - 229
Target Start/End: Complemental strand, 43764136 - 43763974
Alignment:
| Q |
75 |
gtctggagtgaagctcaatctacctgtttcacattctccgcaatgtcactgtgttgccaaacatgcaca--------gagtgacagagtcttaaagccta |
166 |
Q |
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| T |
43764136 |
gtctggagtgaagctcgatccacctgtttcacattcaccgcaatgtcactgtattaccaaacatgcagagttgccatgagagacagagtcttaaagcctc |
43764037 |
T |
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| Q |
167 |
gcggggaatccaaagttgtgaaatgtctttatggttccatcaaaactagctgcaacaactgat |
229 |
Q |
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| T |
43764036 |
gcaggaaatccaaagttgtgaaatgtcttgatcgttccatcaagacctgctgcaacaactgat |
43763974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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