View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_28 (Length: 442)
Name: NF16068_low_28
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_28 |
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| [»] scaffold0012 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 338; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 9 - 426
Target Start/End: Original strand, 33815334 - 33815751
Alignment:
| Q |
9 |
atccatccatcataacttattatcaagtgtattactaacattataattcacttaatttcaaatgcatcacaacctcatcaactttgtgtcatataatctc |
108 |
Q |
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||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33815334 |
atccaaccatcataacttgttatcaagtgtattactaacattataattcacttaatttcaaatgcatcacaacctcatcaaccttgtgtcatataatctc |
33815433 |
T |
|
| Q |
109 |
taaagttaacaacaaagagatgaacttgattagtgatctttccaatgaagatcgagaaaataatgcagttgtgctggacgttccgttgcatcggaggttg |
208 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| | ||||||||||||||||||| |
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| T |
33815434 |
taaagttaacaacaaagagacgaacttgattagtgatctttccaatgaagatcgagaaaataatacagttgtgctggatgctccgttgcatcggaggttg |
33815533 |
T |
|
| Q |
209 |
atccttcgtggttgtcttcacgacggaggagaatggtacctgcaagcatgtcaacacttcgatggtcaagtcagtaagagaaagatgtggatatgtgcga |
308 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||| ||||||||||||| ||||||||| ||| ||||||||||||||||||||||||| |
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| T |
33815534 |
atccttcgtggttgtcttcaagacggaggagaatgatacctgcaaacatgtcaacactttgatggtcaaatcaaaaagagaaagatgtggatatgtgcga |
33815633 |
T |
|
| Q |
309 |
aatgatgtaaaagtgaatcataccttaggggtgacgttaagtcatccttatataagcgtgtaagaacataaccgtcttcgttaaatgcacgacgcctctc |
408 |
Q |
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||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||| |
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| T |
33815634 |
aatgatgtaaaagtgaatcatactttaggggtgatgttaaatcatccttatataagcgtgtaagaacataaccgtcttcgtgaaatgcacgacgtctctc |
33815733 |
T |
|
| Q |
409 |
catgaggtggtttgagat |
426 |
Q |
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| T |
33815734 |
catgaggtggttagagat |
33815751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 274 - 362
Target Start/End: Original strand, 3205763 - 3205851
Alignment:
| Q |
274 |
tcaagtcagtaagagaaagatgtggatatgtgcgaaatgatgtaaaagtgaatcataccttaggggtgacgttaagtcatccttatata |
362 |
Q |
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|||||| |||| ||||| || |||||||||||||||| | ||||||||||| | ||| ||||||||||||| | |||| ||| ||||| |
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| T |
3205763 |
tcaagttagtatgagaacgagatggatatgtgcgaaataaggtaaaagtgaaacgtactttaggggtgacgtcatgtcaccctcatata |
3205851 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 142 - 370
Target Start/End: Complemental strand, 48954523 - 48954295
Alignment:
| Q |
142 |
tgatctttccaatgaagatcgagaaaataatgcagttgtgctggacgttccgttgcatcggaggttgatccttcgtggttgtcttcacgacggaggagaa |
241 |
Q |
| |
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|||||| ||||||||||||| |||||| | | |||||||||| |||| |||||| ||| ||||||||||||| || | |||||| |||||||||| |
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| T |
48954523 |
tgatctgtccaatgaagatctagaaaagagtatagttgtgctgagcgtttcgttgcggtggatgttgatccttcgttgtggaattcacggcggaggagaa |
48954424 |
T |
|
| Q |
242 |
tggtacctgcaagcatgtcaacacttcgatggtcaagtcagtaagagaaagatgtggatatgtgcgaaatgatgtaaaagtgaatcataccttaggggtg |
341 |
Q |
| |
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| || ||||||| | || | |||| | | |||||| |||| || || || |||||||||||||||||| |||||||| ||| | |||| |||||| |
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| T |
48954423 |
ttgtgcctgcaaactcgttagcactctcacgctcaagttagtatgaaaatgaggtggatatgtgcgaaatggggtaaaagttaattgtgccttgggggtg |
48954324 |
T |
|
| Q |
342 |
acgttaagtcatccttatataagcgtgta |
370 |
Q |
| |
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|||||| ||| ||||||||| ||||||| |
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| T |
48954323 |
acgttacatcacccttatataggcgtgta |
48954295 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 276 - 385
Target Start/End: Complemental strand, 26888036 - 26887927
Alignment:
| Q |
276 |
aagtcagtaagagaaagatgtggatatgtgcgaaatgatgtaaaagtgaatcataccttaggggtgacgttaagtcatccttatataagcgtgtaagaac |
375 |
Q |
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|||| |||| ||||| || |||||||||||| ||||| |||||||||||| |||||| ||||||| || |||| |||||||| ||||||| || |
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| T |
26888036 |
aagttagtatgagaatgaggtggatatgtgcaaaatggggtaaaagtgaattgtaccttgagggtgacactatgtcacccttatatgtgcgtgtaggaga |
26887937 |
T |
|
| Q |
376 |
ataaccgtct |
385 |
Q |
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|||||||||| |
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| T |
26887936 |
ataaccgtct |
26887927 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0012 (Bit Score: 34; Significance: 0.0000000006; HSPs: 1)
Name: scaffold0012
Description:
Target: scaffold0012; HSP #1
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 317 - 362
Target Start/End: Original strand, 149217 - 149262
Alignment:
| Q |
317 |
aaaagtgaatcataccttaggggtgacgttaagtcatccttatata |
362 |
Q |
| |
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|||||||||||||||||| ||||||| ||||||||| ||||||||| |
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| T |
149217 |
aaaagtgaatcataccttgggggtgaagttaagtcacccttatata |
149262 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.00000001; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 225 - 396
Target Start/End: Complemental strand, 31696928 - 31696757
Alignment:
| Q |
225 |
ttcacgacggaggagaatggtacctgcaagcatgtcaacacttcgatggtcaagtcagtaagagaaagatgtggatatgtgcgaaatgatgtaaaagtga |
324 |
Q |
| |
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|||||||| ||||||||| || || || |||||| | |||| ||| |||||| ||| ||||| || ||||||||||| |||||| |||||||||| |
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| T |
31696928 |
ttcacgacagaggagaattgtgtctacatgcatgttagcactccgaaactcaagttggtatgagaatgaggtggatatgtgtgaaatgtggtaaaagtga |
31696829 |
T |
|
| Q |
325 |
atcataccttaggggtgacgttaagtcatccttatataagcgtgtaagaacataaccgtcttcgttaaatgc |
396 |
Q |
| |
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||| |||||| || |||||| || || |||||| || ||||||| || |||||||||| ||| |||||| |
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| T |
31696828 |
atcgtaccttgggagtgacgctacatcgcccttatttatgcgtgtaggagaataaccgtctccgtgaaatgc |
31696757 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 201 - 242
Target Start/End: Complemental strand, 63645 - 63604
Alignment:
| Q |
201 |
ggaggttgatccttcgtggttgtcttcacgacggaggagaat |
242 |
Q |
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|||||||||||||| | ||| ||||||||||||||||||||| |
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| T |
63645 |
ggaggttgatcctttgcggtggtcttcacgacggaggagaat |
63604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 369
Target Start/End: Original strand, 8019019 - 8019071
Alignment:
| Q |
317 |
aaaagtgaatcataccttaggggtgacgttaagtcatccttatataagcgtgt |
369 |
Q |
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|||||||||||||||||| ||||||| | || |||| ||||||||| |||||| |
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| T |
8019019 |
aaaagtgaatcataccttgggggtgaagctatgtcacccttatataggcgtgt |
8019071 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 232 - 362
Target Start/End: Original strand, 19431320 - 19431450
Alignment:
| Q |
232 |
cggaggagaatggtacctgcaagcatgtcaacacttcgatggtcaagtcagtaagagaaagatgtggatatgtgcgaaatgatgtaaaagtgaatcatac |
331 |
Q |
| |
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||||||||||| || | |||||||| || |||||| || | |||| ||| || ||||| || |||||||||||| ||||| |||||||||||| ||| |
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| T |
19431320 |
cggaggagaattgtgcatgcaagcacgttaacactctgacgctcaaatcaatatgagaatgaggtggatatgtgcaaaatgtggtaaaagtgaattgtac |
19431419 |
T |
|
| Q |
332 |
cttaggggtgacgttaagtcatccttatata |
362 |
Q |
| |
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|||| ||||||| || ||| ||||||||| |
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| T |
19431420 |
attagaggtgacgctatatcacccttatata |
19431450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 385
Target Start/End: Original strand, 17626971 - 17627038
Alignment:
| Q |
317 |
aaaagtgaatcataccttaggggtgacgttaagtcatccttatataagcgtgtaagaacataaccgtct |
385 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||||||| ||||| ||| ||||||| || |||||||||| |
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| T |
17626971 |
aaaagtgaatcatacctt-ggggtgaagctaagtcacccttaaataggcgtgtatgagaataaccgtct |
17627038 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 385
Target Start/End: Original strand, 17658031 - 17658098
Alignment:
| Q |
317 |
aaaagtgaatcataccttaggggtgacgttaagtcatccttatataagcgtgtaagaacataaccgtct |
385 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||||||| ||||| ||| ||||||| || |||||||||| |
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|
| T |
17658031 |
aaaagtgaatcatacctt-ggggtgaagctaagtcacccttaaataggcgtgtatgagaataaccgtct |
17658098 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 317 - 385
Target Start/End: Original strand, 17672043 - 17672110
Alignment:
| Q |
317 |
aaaagtgaatcataccttaggggtgacgttaagtcatccttatataagcgtgtaagaacataaccgtct |
385 |
Q |
| |
|
|||||||||||||||||| ||||||| | ||||||| ||||| ||| ||||||| || |||||||||| |
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| T |
17672043 |
aaaagtgaatcatacctt-ggggtgaagctaagtcacccttaaataggcgtgtatgagaataaccgtct |
17672110 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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