View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_29 (Length: 440)
Name: NF16068_low_29
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_29 |
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Alignment Details
Target: chr5 (Bit Score: 333; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 333; E-Value: 0
Query Start/End: Original strand, 1 - 424
Target Start/End: Complemental strand, 6624763 - 6624347
Alignment:
| Q |
1 |
agaatggtttactcgttgtacaaatactttgaatttttaatcaatatcatgatacaagaaggaatttgcatttcaagttcaggagttaaacttgaaggac |
100 |
Q |
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| T |
6624763 |
agaatggtttactcgttgtacaaatactttgaatttttaatcaatatcatgatacaagaaggaatttgcatttcaagttcaggagttaaacttgaaggac |
6624664 |
T |
|
| Q |
101 |
aaatttttgtttgcaaaaatttattttgcttgtttgaaatcaacaattctattacccattcaagccggttcagttgcaatcgactaacgaaacttcttgc |
200 |
Q |
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| T |
6624663 |
aaatttt---------------attttgcttgtttgaaatcaacaattctattacccattcaagccggttcagttgcaattgactaacgaaacttcttgc |
6624579 |
T |
|
| Q |
201 |
agcatatatgggtgatca--------tctattaattttcattactcggatatgattgtgatgtttatacgtttgcttttagaactgtgtgcttctctaag |
292 |
Q |
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| T |
6624578 |
agcatatatgggtgatcaactgatcatctattaattttcattactcggatatgattgtgatgtttatacgtttgcttttagaacagtgtgcttctctaag |
6624479 |
T |
|
| Q |
293 |
ttttatatgttctttagtttgagttatgtatgacatagaattatcctttcttttgaattttagtagctttcaccaccaatttgttgccagtagttacttt |
392 |
Q |
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|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
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| T |
6624478 |
ttttatatgttctttagtttgaattatgtatgacatagaattatcctttcttttgaattttagtagctttcaccaccaatttgctgccagtagttacttt |
6624379 |
T |
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| Q |
393 |
gcgcctattaatagtcttggaatctctgtttc |
424 |
Q |
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|| ||||||||||||||||||||||||||||| |
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| T |
6624378 |
gcacctattaatagtcttggaatctctgtttc |
6624347 |
T |
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