View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_low_3 (Length: 751)

Name: NF16068_low_3
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_low_3
NF16068_low_3
[»] chr2 (5 HSPs)
chr2 (52-733)||(12267595-12268276)
chr2 (18-58)||(1777462-1777502)
chr2 (18-60)||(25979277-25979319)
chr2 (18-59)||(12068371-12068412)
chr2 (20-61)||(24358914-24358955)
[»] chr6 (5 HSPs)
chr6 (18-56)||(20895953-20895991)
chr6 (21-60)||(30253568-30253607)
chr6 (18-48)||(3279525-3279555)
chr6 (20-54)||(17516159-17516193)
chr6 (19-48)||(1171678-1171707)
[»] chr7 (4 HSPs)
chr7 (20-60)||(41693636-41693676)
chr7 (20-54)||(28263040-28263074)
chr7 (20-69)||(8555768-8555817)
chr7 (18-55)||(24195603-24195640)
[»] chr8 (3 HSPs)
chr8 (20-59)||(10872907-10872946)
chr8 (18-52)||(3483632-3483666)
chr8 (20-61)||(27117945-27117986)
[»] chr4 (4 HSPs)
chr4 (18-57)||(29060908-29060947)
chr4 (18-49)||(33137254-33137285)
chr4 (18-61)||(42358022-42358065)
chr4 (20-49)||(33134893-33134922)
[»] chr3 (4 HSPs)
chr3 (18-49)||(20585670-20585701)
chr3 (18-49)||(45267307-45267338)
chr3 (20-49)||(48035760-48035789)
chr3 (20-61)||(52401007-52401048)
[»] chr1 (4 HSPs)
chr1 (20-59)||(25658270-25658309)
chr1 (18-49)||(46075076-46075107)
chr1 (19-57)||(11710547-11710585)
chr1 (18-56)||(20723714-20723752)
[»] chr5 (2 HSPs)
chr5 (19-49)||(31541649-31541679)
chr5 (18-55)||(3936574-3936611)
[»] scaffold0176 (1 HSPs)
scaffold0176 (20-61)||(21686-21727)


Alignment Details
Target: chr2 (Bit Score: 600; Significance: 0; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 600; E-Value: 0
Query Start/End: Original strand, 52 - 733
Target Start/End: Complemental strand, 12268276 - 12267595
Alignment:
Q  52 tttattttaaaatgtcatcgtaagtgtggtattctcatcttgaatgtatcaatatcattaaacaaaacttggaatgaggtttacactaggtgccccatgt 151  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12268276 tttattttaaaatgtcattgtaagtgtggtattctcatcttgaatgtatcaatatcattaaacaaaacttggaatgaggtttacactaggtgccccatgt 12268177  T
Q  152 ttgtgcttagtcaaaacatcaaatccttgaaagtcaaacataaggattggaataagaatgtgttcggggacattaacatcaatttccaagtaactaaatc 251  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||     
T  12268176 ttgtgcttagtcaaaacatcaaatccttgaaagtcaaacataaggattggaataagaatgtgttcggggacattaacatcaatttccaagtaactgaata 12268077  T
Q  252 taaccttcatcaaattcagagtcaaactaatgatagtgtctacaacaataatcttcttgttgaagagaaagttgtggatagaatcaaatccaaattgaca 351  Q
     |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12268076 caaccttcatcaaattcagagtcaaactaatgatagtgtctacaacaataatcttcttgttgaagagaaagttgtggatagaatcaaatccaaattgaca 12267977  T
Q  352 actttgaaggcctctttaatttctatagtgggaagggttcaagttattagattttaattcatagcatgagtatctatagctttgtcatttattcattgtg 451  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |    
T  12267976 actttgaaggcatctttaatttctatagtgggaagggttcaagttattagattttaattcatagtatgagtatctatagctttgtcatttattcattgcg 12267877  T
Q  452 tgatctgatggcattgaactggaaggaggaacaaatgatttccaaacattcttagccctaggctgcttattcaatggaggattttgaaacatgtaagcat 551  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  12267876 tgatctgatggcattgaactggaaggaggaacaaatgatttccaaacattcttagccctaggctgcttatacaatggaggattttgaaacatgtaagcat 12267777  T
Q  552 ccttataaaacatctctccattggttgatttgttccatgcgtacattttacaaaatagaaaagnnnnnnngatgaggataaaccatttctgattattaat 651  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||    
T  12267776 ccttataaaacatctcaccattggttgatttgttccatgcgtacattttacaaaatagaaaagaaaaagagatgaggataaaccatttctgattattaat 12267677  T
Q  652 caaatcttcgcctatattctatactctcttttattcttgacctatattctctatgctcnnnnnnnctcagaaggttttattc 733  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  12267676 caaatcttggcctatattctatactctcttttattcttgacctatattctctatgctctttttttctcagaaggttttattc 12267595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 18 - 58
Target Start/End: Complemental strand, 1777502 - 1777462
Alignment:
Q  18 ctatatttgcagggatcaaaaacatattttagtctttattt 58  Q
    ||||||||||||||| |||||||||||||||| ||||||||    
T  1777502 ctatatttgcagggaccaaaaacatattttagcctttattt 1777462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 60
Target Start/End: Original strand, 25979277 - 25979319
Alignment:
Q  18 ctatatttgcagggatcaaaaacatattttagtctttatttta 60  Q
    ||||||||||||||| |||||||||||||||| ||| ||||||    
T  25979277 ctatatttgcagggaccaaaaacatattttagccttaatttta 25979319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 59
Target Start/End: Original strand, 12068371 - 12068412
Alignment:
Q  18 ctatatttgcagggatcaaaaacatattttagtctttatttt 59  Q
    ||||||||||||||||||||| |||||||||| || ||||||    
T  12068371 ctatatttgcagggatcaaaagcatattttagcctatatttt 12068412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 24358914 - 24358955
Alignment:
Q  20 atatttgcagggatcaaaaacatattttagtctttattttaa 61  Q
    ||||||||||||||||||| |||||||||| ||| |||||||    
T  24358914 atatttgcagggatcaaaaccatattttagccttcattttaa 24358955  T

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Target: chr6 (Bit Score: 35; Significance: 0.0000000003; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 18 - 56
Target Start/End: Complemental strand, 20895991 - 20895953
Alignment:
Q  18 ctatatttgcagggatcaaaaacatattttagtctttat 56  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  20895991 ctatatttgcagggaccaaaaacatattttagtctttat 20895953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 21 - 60
Target Start/End: Original strand, 30253568 - 30253607
Alignment:
Q  21 tatttgcagggatcaaaaacatattttagtctttatttta 60  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  30253568 tatttgcagggaccaaaaacatattttagtctttttttta 30253607  T

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Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 3279525 - 3279555
Alignment:
Q  18 ctatatttgcagggatcaaaaacatatttta 48  Q
    |||||||||||||||||||||||||||||||    
T  3279525 ctatatttgcagggatcaaaaacatatttta 3279555  T

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Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 54
Target Start/End: Complemental strand, 17516193 - 17516159
Alignment:
Q  20 atatttgcagggatcaaaaacatattttagtcttt 54  Q
    ||||||||||||| |||||||||||||||||||||    
T  17516193 atatttgcagggaccaaaaacatattttagtcttt 17516159  T

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Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 19 - 48
Target Start/End: Original strand, 1171678 - 1171707
Alignment:
Q  19 tatatttgcagggatcaaaaacatatttta 48  Q
    ||||||||||||||||||||||||||||||    
T  1171678 tatatttgcagggatcaaaaacatatttta 1171707  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000004; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 20 - 60
Target Start/End: Complemental strand, 41693676 - 41693636
Alignment:
Q  20 atatttgcagggatcaaaaacatattttagtctttatttta 60  Q
    |||||||||||||||||||||||||||||| ||||| ||||    
T  41693676 atatttgcagggatcaaaaacatattttagcctttaattta 41693636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 20 - 54
Target Start/End: Original strand, 28263040 - 28263074
Alignment:
Q  20 atatttgcagggatcaaaaacatattttagtcttt 54  Q
    ||||||||||||||||||| |||||||||||||||    
T  28263040 atatttgcagggatcaaaaccatattttagtcttt 28263074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 8555768 - 8555817
Alignment:
Q  20 atatttgcagggatcaaaaacatattttagtctttattttaaaatgtcat 69  Q
    |||||||||||||  |||| |||||||||| |||||||||||||| ||||    
T  8555768 atatttgcagggactaaaaccatattttagcctttattttaaaatatcat 8555817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 24195640 - 24195603
Alignment:
Q  18 ctatatttgcagggatcaaaaacatattttagtcttta 55  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  24195640 ctatatttgcagggaccaaaaacatattttagccttta 24195603  T

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Target: chr8 (Bit Score: 32; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Complemental strand, 10872946 - 10872907
Alignment:
Q  20 atatttgcagggatcaaaaacatattttagtctttatttt 59  Q
    ||||||||||||||||||| |||||||||| |||||||||    
T  10872946 atatttgcagggatcaaaaccatattttagcctttatttt 10872907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 52
Target Start/End: Complemental strand, 3483666 - 3483632
Alignment:
Q  18 ctatatttgcagggatcaaaaacatattttagtct 52  Q
    ||||||||||||||| |||||||||||||||||||    
T  3483666 ctatatttgcagggaccaaaaacatattttagtct 3483632  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Original strand, 27117945 - 27117986
Alignment:
Q  20 atatttgcagggatcaaaaacatattttagtctttattttaa 61  Q
    ||||||||||||| ||||| |||||||||| |||||||||||    
T  27117945 atatttgcagggaccaaaaccatattttagcctttattttaa 27117986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 57
Target Start/End: Original strand, 29060908 - 29060947
Alignment:
Q  18 ctatatttgcagggatcaaaaacatattttagtctttatt 57  Q
    |||||||||||||||| ||||||||||||||| |||||||    
T  29060908 ctatatttgcagggattaaaaacatattttagcctttatt 29060947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 33137254 - 33137285
Alignment:
Q  18 ctatatttgcagggatcaaaaacatattttag 49  Q
    ||||||||||||||||||||||||||||||||    
T  33137254 ctatatttgcagggatcaaaaacatattttag 33137285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 61
Target Start/End: Complemental strand, 42358065 - 42358022
Alignment:
Q  18 ctatatttgcagggatcaaaaacatattttagtctttattttaa 61  Q
    ||||||||||||||| |||||||||||||||| |||| ||||||    
T  42358065 ctatatttgcagggaccaaaaacatattttagccttttttttaa 42358022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 33134922 - 33134893
Alignment:
Q  20 atatttgcagggatcaaaaacatattttag 49  Q
    ||||||||||||||||||||||||||||||    
T  33134922 atatttgcagggatcaaaaacatattttag 33134893  T

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Target: chr3 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 20585670 - 20585701
Alignment:
Q  18 ctatatttgcagggatcaaaaacatattttag 49  Q
    ||||||||||||||||||||||||||||||||    
T  20585670 ctatatttgcagggatcaaaaacatattttag 20585701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 45267338 - 45267307
Alignment:
Q  18 ctatatttgcagggatcaaaaacatattttag 49  Q
    ||||||||||||||||||||||||||||||||    
T  45267338 ctatatttgcagggatcaaaaacatattttag 45267307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 49
Target Start/End: Original strand, 48035760 - 48035789
Alignment:
Q  20 atatttgcagggatcaaaaacatattttag 49  Q
    ||||||||||||||||||||||||||||||    
T  48035760 atatttgcagggatcaaaaacatattttag 48035789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 52401048 - 52401007
Alignment:
Q  20 atatttgcagggatcaaaaacatattttagtctttattttaa 61  Q
    ||||||||||||| |||||||||||||||| ||| |||||||    
T  52401048 atatttgcagggaccaaaaacatattttagccttaattttaa 52401007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 59
Target Start/End: Original strand, 25658270 - 25658309
Alignment:
Q  20 atatttgcagggatcaaaaacatattttagtctttatttt 59  Q
    |||||||||||||||||||  |||||||||||||||||||    
T  25658270 atatttgcagggatcaaaagaatattttagtctttatttt 25658309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 49
Target Start/End: Original strand, 46075076 - 46075107
Alignment:
Q  18 ctatatttgcagggatcaaaaacatattttag 49  Q
    ||||||||||||||||||||||||||||||||    
T  46075076 ctatatttgcagggatcaaaaacatattttag 46075107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 57
Target Start/End: Complemental strand, 11710585 - 11710547
Alignment:
Q  19 tatatttgcagggatcaaaaacatattttagtctttatt 57  Q
    ||||||| ||||||||||||||||||||||| |||||||    
T  11710585 tatatttacagggatcaaaaacatattttagcctttatt 11710547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 18 - 56
Target Start/End: Original strand, 20723714 - 20723752
Alignment:
Q  18 ctatatttgcagggatcaaaaacatattttagtctttat 56  Q
    ||||||||||||||| |||||||||||||||| ||||||    
T  20723714 ctatatttgcagggaccaaaaacatattttagcctttat 20723752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 19 - 49
Target Start/End: Original strand, 31541649 - 31541679
Alignment:
Q  19 tatatttgcagggatcaaaaacatattttag 49  Q
    |||||||||||||||||||||||||||||||    
T  31541649 tatatttgcagggatcaaaaacatattttag 31541679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 18 - 55
Target Start/End: Complemental strand, 3936611 - 3936574
Alignment:
Q  18 ctatatttgcagggatcaaaaacatattttagtcttta 55  Q
    ||||||||||||||| |||||||||||||||| |||||    
T  3936611 ctatatttgcagggaccaaaaacatattttagccttta 3936574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0176 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0176
Description:

Target: scaffold0176; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 61
Target Start/End: Complemental strand, 21727 - 21686
Alignment:
Q  20 atatttgcagggatcaaaaacatattttagtctttattttaa 61  Q
    ||||||||||||||||||| |||||||||| |||| ||||||    
T  21727 atatttgcagggatcaaaaccatattttagccttttttttaa 21686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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