View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_low_38 (Length: 389)

Name: NF16068_low_38
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_low_38
NF16068_low_38
[»] chr5 (23 HSPs)
chr5 (58-370)||(30434297-30434603)
chr5 (58-370)||(30243694-30244002)
chr5 (141-370)||(30339847-30340084)
chr5 (141-370)||(30748201-30748424)
chr5 (141-370)||(29870744-29870967)
chr5 (141-370)||(30481890-30482113)
chr5 (141-370)||(30058855-30059069)
chr5 (145-370)||(29851863-29852080)
chr5 (141-296)||(30678629-30678788)
chr5 (233-368)||(30398658-30398793)
chr5 (238-365)||(17419218-17419345)
chr5 (145-221)||(30714551-30714627)
chr5 (282-370)||(4380357-4380445)
chr5 (246-368)||(29710294-29710416)
chr5 (251-318)||(30202743-30202810)
chr5 (11-61)||(30057677-30057727)
chr5 (250-354)||(30246138-30246242)
chr5 (58-134)||(40661591-40661667)
chr5 (141-207)||(30058596-30058667)
chr5 (250-368)||(30205102-30205220)
chr5 (11-61)||(30679513-30679563)
chr5 (249-317)||(17981534-17981602)
chr5 (11-61)||(30715678-30715728)
[»] chr7 (1 HSPs)
chr7 (141-370)||(26705819-26706044)
[»] chr4 (4 HSPs)
chr4 (198-359)||(20298080-20298245)
chr4 (246-351)||(20303970-20304074)
chr4 (241-317)||(13615444-13615520)
chr4 (246-319)||(52350551-52350624)
[»] chr1 (1 HSPs)
chr1 (240-317)||(7097997-7098074)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 23)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 58 - 370
Target Start/End: Original strand, 30434297 - 30434603
Alignment:
Q  58 taatgagaatatataacgatttttgaataaaattcgagtaaattaatcacttaaaatccaaacaaaagaagggtgtattttagggggaaatagagatcct 157  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30434297 taatgagaatatataacgatttttgaataaaattcgagtcaattaatcacttaaaatccaaacaaaagaagggtgtattttagggggaaatagagatcct 30434396  T
Q  158 accagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaatcccattaaaactcaaactttatttttggaatatg 257  Q
    ||||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||   ||| ||   || |||| |||| ||||||||||    
T  30434397 accagtaaaatagatttttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaa--acatcaa---tc-aactctattcttggaatatg 30434490  T
Q  258 agctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtgaggtgttga 357  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |   |||  ||||||||||||||||||||||||| ||    
T  30434491 agctatcttgtcccaatcctcccctgttccctctttgcatcgttcctttaatgttgggcaatcaatgatagacagaagctcaagagaagtgaggtgtcga 30434590  T
Q  358 ataccctccggca 370  Q
    |||||||||||||    
T  30434591 ataccctccggca 30434603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 58 - 370
Target Start/End: Complemental strand, 30244002 - 30243694
Alignment:
Q  58 taatgagaatatataacgatttttgaataaaattcgagtaaattaatcacttaaaatccaaacaaaagaagggtgtattttagggggaaatagagatcct 157  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  30244002 taatgagaatatataacgattttttaataaaattcgagtaaattaatcacttaaaatccaaacataagaagggtgtattttagggggaaatagagatcct 30243903  T
Q  158 accagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctg--cttcttaatcccattaaaactcaaactttatttttggaata 255  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||  |||||| || |   |||||   || |  | |||||||||||    
T  30243902 accagtaaaattgatttttgcgatggtgattgaggcagataagggtaaacgtctctgcccttcttcattc---taaaa---aatcactctttttggaata 30243809  T
Q  256 tgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtgaggtgtt 355  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | || ||||  || || |||||||||||||||||||     
T  30243808 tgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttggacatttataaatattcaaaacctcaagagaagtgaggtgtc 30243709  T
Q  356 gaataccctccggca 370  Q
    |||||||||||||||    
T  30243708 gaataccctccggca 30243694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 141 - 370
Target Start/End: Complemental strand, 30340084 - 30339847
Alignment:
Q  141 ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaatc--ccattaaa------ 232  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |  | |||||           
T  30340084 ggggaaatagagatcttaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaaacatcaattaactctatc 30339985  T
Q  233 actcaaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcag 332  Q
    ||| ||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |   |||  |||    
T  30339984 acttaaactgtatatttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaattaatgatagtcag 30339885  T
Q  333 aagctcaagagaagtgaggtgttgaataccctccggca 370  Q
    |||||||||||||||||||||| |||||||||||||||    
T  30339884 aagctcaagagaagtgaggtgtcgaataccctccggca 30339847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 141 - 370
Target Start/End: Original strand, 30748201 - 30748424
Alignment:
Q  141 ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaatcccattaaaactcaaac 240  Q
    ||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||  |        ||||    
T  30748201 ggggaaatagagatcttaccagtaaaattgaattttgcgattgtgattgaggcagataagggtaaacgtctctgcttcttaatcctct------gtaaac 30748294  T
Q  241 tttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcagaagctcaa 340  Q
      |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |   |||   ||||||||||    
T  30748295 agtatttttggaatatgagctatcttgtcccaatcctcccatgttccctctttgcatcgttcctctaatgttgggcaatcaatgatatcaagaagctcaa 30748394  T
Q  341 gagaagtgaggtgttgaataccctccggca 370  Q
    |||||||||||||| |||||||||||||||    
T  30748395 gagaagtgaggtgtcgaataccctccggca 30748424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 141 - 370
Target Start/End: Original strand, 29870744 - 29870967
Alignment:
Q  141 ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaatcc-cattaaaactcaaa 239  Q
    |||||||| |||||||||| ||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| |  ||||           
T  29870744 ggggaaattgagatcctacaagtaaaattgatttttgcgatgttgattgtggcagataagggtaaacgtctctgcttcttaatcctcggtaaa------- 29870836  T
Q  240 ctttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcagaagctca 339  Q
    || |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||   ||||||||||    
T  29870837 ctgtattattggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaaccctcaattgccagaagctca 29870936  T
Q  340 agagaagtgaggtgttgaataccctccggca 370  Q
    || |||||||||||| |||||||||||||||    
T  29870937 agtgaagtgaggtgtcgaataccctccggca 29870967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 121; E-Value: 7e-62
Query Start/End: Original strand, 141 - 370
Target Start/End: Original strand, 30481890 - 30482113
Alignment:
Q  141 ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaatcc-cattaaaactcaaa 239  Q
    |||||||| |||||| ||||||||||||||| |||||||||| |||||| ||||||||||||||||||||||||||||||||||| |  ||||           
T  30481890 ggggaaattgagatcttaccagtaaaattgatttttgcgatgttgattgtggcagataagggtaaacgtctctgcttcttaatcctcggtaaa------- 30481982  T
Q  240 ctttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcagaagctca 339  Q
    || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |    |||   ||||| ||||    
T  30481983 ctgtatttttggaatatgagctatcttgtcccaatcctcccatgttccctctttgcatcgttcctctaatgttgggcattcccaaattgtcagaacctca 30482082  T
Q  340 agagaagtgaggtgttgaataccctccggca 370  Q
    ||||||||||||||| |||||||||||||||    
T  30482083 agagaagtgaggtgtcgaataccctccggca 30482113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 104; E-Value: 9e-52
Query Start/End: Original strand, 141 - 370
Target Start/End: Original strand, 30058855 - 30059069
Alignment:
Q  141 ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttcttaatcccattaaaactcaaac 240  Q
    |||||||| |||||||||||||||||||||| |||||||||||| | ||||||||||||||||||||||||||||||||||               ||||    
T  30058855 ggggaaattgagatcctaccagtaaaattgatttttgcgatggttaatgaggcagataagggtaaacgtctctgcttctta---------------aaac 30058939  T
Q  241 tttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcagaagctcaa 340  Q
    | ||||||||||||||||| |||||||||||||||||||||||||| ||  ||||||||||||| ||||||| |||||  |   |||  |||||||||||    
T  30058940 tgtatttttggaatatgagatatcttgtcccaatcctcccctgttcgcttcttgcatcgttcctttaatgttcggcaaccaatgatagtcagaagctcaa 30059039  T
Q  341 gagaagtgaggtgttgaataccctccggca 370  Q
    |||||||||||||| |||||||||||||||    
T  30059040 gagaagtgaggtgtcgaataccctccggca 30059069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 145 - 370
Target Start/End: Original strand, 29851863 - 29852080
Alignment:
Q  145 aaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggc-agataagggtaaacgtctctgcttcttaatcccattaaaactcaaacttt 243  Q
    ||||||||| |||||||||||||| ||  |||||||||||||||||||| ||||||||||||| ||||||||||||||||         | | ||||| |    
T  29851863 aaatagagagcctaccagtaaaatagatctttgcgatggtgattgaggccagataagggtaaatgtctctgcttcttaat---------agttaaactgt 29851953  T
Q  244 atttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcagaagctcaagag 343  Q
    || ||||||||||||| |||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||  | |||   ||||||||||||||    
T  29851954 atatttggaatatgagatatcttgtcccaatcctcacatgttcccactttgcatcgttcctctaatgttgggcaatttttaattgacagaagctcaagag 29852053  T
Q  344 aagtgaggtgttgaataccctccggca 370  Q
    |||||||||||  ||||||||||||||    
T  29852054 aagtgaggtgtccaataccctccggca 29852080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 98; E-Value: 4e-48
Query Start/End: Original strand, 141 - 296
Target Start/End: Complemental strand, 30678788 - 30678629
Alignment:
Q  141 ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataa-gggtaaacgtctctgcttcttaatcc---cattaaaactc 236  Q
    |||||||| |||||||||||||||||||  | |||||||||||||||| |||||||||| ||||||||||||||||||||||||||   |||| |||||     
T  30678788 ggggaaattgagatcctaccagtaaaatatatttttgcgatggtgattaaggcagataaagggtaaacgtctctgcttcttaatcctcccattcaaactt 30678689  T
Q  237 aaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgca 296  Q
    ||||| |||||||||||||||||||||||||||||||||||||||  |||||||||||||    
T  30678688 aaactgtatttttggaatatgagctatcttgtcccaatcctcccccattccctctttgca 30678629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 233 - 368
Target Start/End: Original strand, 30398658 - 30398793
Alignment:
Q  233 actcaaactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcag 332  Q
    |||| |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||  ||   |||    
T  30398658 actccaactgtatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctttaatgttgggcaatcattgattgtcag 30398757  T
Q  333 aagctcaagagaagtgaggtgttgaataccctccgg 368  Q
    || |||||||||||||||||||  ||||||||||||    
T  30398758 aacctcaagagaagtgaggtgtctaataccctccgg 30398793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 238 - 365
Target Start/End: Complemental strand, 17419345 - 17419218
Alignment:
Q  238 aactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcagaagct 337  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||| | | || |||   ||||| ||    
T  17419345 aactttatttttggaatatgagctatcttgtcccaatcctccccggttccctccttgcatcgttcctctaatgttggggagtcataaatgttcagaaact 17419246  T
Q  338 caagagaagtgaggtgttgaataccctc 365  Q
    |  |||||||||||||| ||||||||||    
T  17419245 cgggagaagtgaggtgtcgaataccctc 17419218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 145 - 221
Target Start/End: Complemental strand, 30714627 - 30714551
Alignment:
Q  145 aaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgcttctta 221  Q
    ||||||||||||||||||||||||||| ||||| |||||  | ||||||||||||||||||||||||||||||||||    
T  30714627 aaatagagatcctaccagtaaaattgatttttgtgatggctaatgaggcagataagggtaaacgtctctgcttctta 30714551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 282 - 370
Target Start/End: Original strand, 4380357 - 4380445
Alignment:
Q  282 tgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtgaggtgttgaataccctccggca 370  Q
    |||||||||||||||||||||||||||||||||||||  |   || | ||||| ||||||||||||||||||| |||||||||||||||    
T  4380357 tgttccctctttgcatcgttcctctaatgttgggcaaccaatgattctcagaacctcaagagaagtgaggtgtcgaataccctccggca 4380445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 246 - 368
Target Start/End: Complemental strand, 29710416 - 29710294
Alignment:
Q  246 ttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcagaagctcaagagaa 345  Q
    |||||||| ||| |||||||||||| ||||||||| || |||||| |||||||||||||||||||||| | ||| || || |  ||||| ||||||||||    
T  29710416 ttttggaacatgcgctatcttgtcctaatcctcccttgctccctccttgcatcgttcctctaatgttgagaaattataaaaatacagaacctcaagagaa 29710317  T
Q  346 gtgaggtgttgaataccctccgg 368  Q
    |||||| |   ||||||||||||    
T  29710316 gtgaggcgagcaataccctccgg 29710294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 251 - 318
Target Start/End: Original strand, 30202743 - 30202810
Alignment:
Q  251 gaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaa 318  Q
    ||||||| |||||||||||||| | ||||||||||||||| |||||||||||||  ||| ||||||||    
T  30202743 gaatatgtgctatcttgtcccagttctcccctgttccctccttgcatcgttccttcaatattgggcaa 30202810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 11 - 61
Target Start/End: Original strand, 30057677 - 30057727
Alignment:
Q  11 attattcttattatgtatgcaggtcctgtcgtcatgaactaagtttgtaat 61  Q
    ||||| ||||||||||||||||||||  |||||||||||||||||||||||    
T  30057677 attatacttattatgtatgcaggtccactcgtcatgaactaagtttgtaat 30057727  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 250 - 354
Target Start/End: Complemental strand, 30246242 - 30246138
Alignment:
Q  250 ggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtga 349  Q
    |||||||||| ||||||||||| |||||||| |||  |||  |||||||| |||| |||||||||  ||| || ||||  ||||| ||| ||||||||||    
T  30246242 ggaatatgagatatcttgtcccgatcctcccatgtctccttcttgcatcgctcctttaatgttggagaatgatgaatattcagaacctcgagagaagtga 30246143  T
Q  350 ggtgt 354  Q
    |||||    
T  30246142 ggtgt 30246138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 58 - 134
Target Start/End: Original strand, 40661591 - 40661667
Alignment:
Q  58 taatgagaatatataacgatttttgaataaaattcgagtaaattaatcacttaaaatccaaacaaaagaagggtgta 134  Q
    ||||||||||||| ||| |||||||||||||| || ||| |||| | ||||| ||||||||||| || |||||||||    
T  40661591 taatgagaatatacaacaatttttgaataaaaatccagtcaattgagcacttgaaatccaaacacaaaaagggtgta 40661667  T

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Target: chr5; HSP #19
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 141 - 207
Target Start/End: Original strand, 30058596 - 30058667
Alignment:
Q  141 ggggaaatagagatcctaccagtaaa----attgaattttgcgatggtgattgagg-cagataagggtaaac 207  Q
    ||||||||||||||| ||||||| ||    ||||||||||||||||||||| |||| |||||||||||||||    
T  30058596 ggggaaatagagatcttaccagttaagtgaattgaattttgcgatggtgatcgaggccagataagggtaaac 30058667  T

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Target: chr5; HSP #20
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 250 - 368
Target Start/End: Original strand, 30205102 - 30205220
Alignment:
Q  250 ggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtga 349  Q
    |||||||| | |||||||| ||| ||||| ||||||||||| |||||||| || |||| |||||| |||  |  |||   ||||||||| ||||||||||    
T  30205102 ggaatatgcgatatcttgtaccagtcctctcctgttccctccttgcatcgctcttctagtgttggacaaccacgaattgtcagaagctccagagaagtga 30205201  T
Q  350 ggtgttgaataccctccgg 368  Q
    | ||| ||||||| |||||    
T  30205202 gatgtcgaataccttccgg 30205220  T

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Target: chr5; HSP #21
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 30679563 - 30679513
Alignment:
Q  11 attattcttattatgtatgcaggtcctgtcgtcatgaactaagtttgtaat 61  Q
    ||||| ||||||||||||||| |||| |||||| |||||||||||||||||    
T  30679563 attatacttattatgtatgcaagtccagtcgtcctgaactaagtttgtaat 30679513  T

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Target: chr5; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 249 - 317
Target Start/End: Original strand, 17981534 - 17981602
Alignment:
Q  249 tggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggca 317  Q
    ||||||||| |||||||||||||| || || || |||||||| |||||||| | ||| |||||||||||    
T  17981534 tggaatatgggctatcttgtcccagtcttctccggttccctcattgcatcgcttctccaatgttgggca 17981602  T

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Target: chr5; HSP #23
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 11 - 61
Target Start/End: Complemental strand, 30715728 - 30715678
Alignment:
Q  11 attattcttattatgtatgcaggtcctgtcgtcatgaactaagtttgtaat 61  Q
    ||||| ||||||| ||||||||||||  ||||||||| |||||||||||||    
T  30715728 attatacttattacgtatgcaggtccactcgtcatgagctaagtttgtaat 30715678  T

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Target: chr7 (Bit Score: 114; Significance: 1e-57; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 141 - 370
Target Start/End: Original strand, 26705819 - 26706044
Alignment:
Q  141 ggggaaatagagatcctaccagtaaaattgaattttgcgatggtgattgaggcagataagggtaaacgtctctgc--ttcttaatcccattaaaactcaa 238  Q
    ||||||| ||||||| ||||| |||||| || ||||| |||||||||||||||||||||||||||||||||||||  ||||| || | | |||| ||       
T  26705819 ggggaaacagagatcgtaccactaaaatagatttttgtgatggtgattgaggcagataagggtaaacgtctctgcgcttcttcattctaataaatct--- 26705915  T
Q  239 actttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcagaagctc 338  Q
       |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||     ||| | ||||| |||    
T  26705916 ---ttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaactccaaattctcagaaactc 26706012  T
Q  339 aagagaagtgaggtgttgaataccctccggca 370  Q
    |||||||||||||||| |||||||||| ||||    
T  26706013 aagagaagtgaggtgtcgaataccctctggca 26706044  T

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Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 198 - 359
Target Start/End: Complemental strand, 20298245 - 20298080
Alignment:
Q  198 aagggtaaacgtctctgcttcttaatcccatt-aaaactca---aactttatttttggaatatgagctatcttgtcccaatcctcccctgttccctcttt 293  Q
    |||||||||||||| ||| ||||||||||||| ||||||||   |  | | |||||||||||||||||||||||||||||||||||||||||||||||||    
T  20298245 aagggtaaacgtctttgcgtcttaatcccattcaaaactcacgaatatctctttttggaatatgagctatcttgtcccaatcctcccctgttccctcttt 20298146  T
Q  294 gcatcgttcctctaatgttgggcaataatcaatacgcagaagctcaagagaagtgaggtgttgaat 359  Q
    |||||||  || |||||| ||||||||| | |||  ||||||||||||||||||||||||||||||    
T  20298145 gcatcgtaactttaatgtggggcaataaccgatagtcagaagctcaagagaagtgaggtgttgaat 20298080  T

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Target: chr4; HSP #2
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 246 - 351
Target Start/End: Complemental strand, 20304074 - 20303970
Alignment:
Q  246 ttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaataatcaatacgcagaagctcaagagaa 345  Q
    |||||||||||| |||||||||||| ||||||| |||||||||   ||||| ||||||| |||||||||||| | || ||||| || || |||||| |||    
T  20304074 ttttggaatatgcgctatcttgtcc-aatcctcgcctgttcccgtcttgcaccgttcctttaatgttgggcattcataaatactcaaaacctcaagtgaa 20303976  T
Q  346 gtgagg 351  Q
    ||||||    
T  20303975 gtgagg 20303970  T

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Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 241 - 317
Target Start/End: Original strand, 13615444 - 13615520
Alignment:
Q  241 tttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggca 317  Q
    |||| |||||||||||| |||||||||||||| || |||| ||||||||| |||||||| | ||  |||||||||||    
T  13615444 tttagttttggaatatgcgctatcttgtcccagtcttcccatgttccctccttgcatcgcttcttcaatgttgggca 13615520  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 246 - 319
Target Start/End: Original strand, 52350551 - 52350624
Alignment:
Q  246 ttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggcaat 319  Q
    ||||||||| || ||||| |||||  | |||||||||||||| || || ||||| |||| ||||||||||||||    
T  52350551 ttttggaatgtgcgctattttgtcatagtcctcccctgttccttcattacatcgctcctttaatgttgggcaat 52350624  T

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Target: chr1 (Bit Score: 42; Significance: 0.000000000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 240 - 317
Target Start/End: Original strand, 7097997 - 7098074
Alignment:
Q  240 ctttatttttggaatatgagctatcttgtcccaatcctcccctgttccctctttgcatcgttcctctaatgttgggca 317  Q
    ||||| |||||||||||| |||||||||||||| || |||||||||||||| |||||||| |||   |||||||||||    
T  7097997 ctttagttttggaatatgggctatcttgtcccagtcttcccctgttccctccttgcatcgctccgtcaatgttgggca 7098074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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