View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_41 (Length: 367)
Name: NF16068_low_41
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_41 |
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Alignment Details
Target: chr1 (Bit Score: 152; Significance: 2e-80; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 162 - 321
Target Start/End: Original strand, 5051299 - 5051458
Alignment:
| Q |
162 |
gaacctgtgatggttgaaagatacttttttgtgtttccatcaatgctataaaataataaggttcgcaaacgaagccttcgagtacacagtcacgtttatt |
261 |
Q |
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| T |
5051299 |
gaacctgtgatggttgaaagatacttttttgtgtttccatcaatgctataaaataataaggttcgcaaacgaagccttcgagtacacggtcacgtttatt |
5051398 |
T |
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| Q |
262 |
tctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgtgaggatgt |
321 |
Q |
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| T |
5051399 |
tctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgcgaggatgt |
5051458 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 88; Significance: 3e-42; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 162 - 344
Target Start/End: Complemental strand, 51274120 - 51273943
Alignment:
| Q |
162 |
gaacctgtgatggttgaaagatacttt-tttgtgtttccatcaatgctataaaataataaggttcgcaaacgaagccttcgagtacacagtcacgtttat |
260 |
Q |
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| T |
51274120 |
gaacctgtgatggttgaaagatactttctttgtgctttctccgatgctataa-----taaggttcacaaacaaagccttctagtacacggtcacgtttat |
51274026 |
T |
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| Q |
261 |
ttctgaccggtttccagctatggagggagtggaagtttgatccaatctttcgtgaggatgttgcatacatggtagactctacca |
344 |
Q |
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| T |
51274025 |
tg-tgaccggttcccggcggtggagggagtggaagtttgatccaatcttttgtgaggatgttgcatacatggtagactctacca |
51273943 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 70; Significance: 2e-31; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 43533211 - 43533332
Alignment:
| Q |
40 |
ctgtcaaat-aatttatgtatatgcatgagtgtgattgnnnnnnnnccgttgtgttttacttgctcagtttggagtactcgtcatgttccgatgatcaca |
138 |
Q |
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| T |
43533211 |
ctgtcaaattaatttatgtatatgcatgagtgtgattgttttttttccgttgtgttttacttgctcagtttggagtacccgtcatgtttggatgatcaca |
43533310 |
T |
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| Q |
139 |
attactttataagtgaacgagc |
160 |
Q |
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| T |
43533311 |
attactttataagagaaagagc |
43533332 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 43528929 - 43529033
Alignment:
| Q |
40 |
ctgtcaaataatttatgtatatgcatgagtgtgattgnnnnnnnnccgttgtgttttacttg--ctcagtttggag--tactcgtcatgttccgatgatc |
135 |
Q |
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| T |
43528929 |
ctgtcaaataatttatgtatatgcatgagtatgatttttt------cgttgtgttttacttgtgctcagtttggagactactcgtcatgtttcgatgatt |
43529022 |
T |
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| Q |
136 |
acaattacttt |
146 |
Q |
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| T |
43529023 |
acaattacttt |
43529033 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 43537658 - 43537715
Alignment:
| Q |
88 |
ttgtgttttacttgctcagtttggag--tactcgtcatgttccgatgatcacaattac |
143 |
Q |
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| T |
43537658 |
ttgtgttttacttgctcagtttggagactactcgtcatgtttcaatgatcacaattac |
43537715 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 43523220 - 43523275
Alignment:
| Q |
93 |
ttttacttgctcagtttggag--tactcgtcatgttccgatgatcacaattacttt |
146 |
Q |
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| T |
43523220 |
ttttacttgcgcagtttggaaactactcgtcatgtttcaatgatcacaattacttt |
43523275 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 46; Significance: 4e-17; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 281 - 342
Target Start/End: Complemental strand, 14908035 - 14907974
Alignment:
| Q |
281 |
tggagggagtggaagtttgatccaatctttcgtgaggatgttgcatacatggtagactctac |
342 |
Q |
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| T |
14908035 |
tggagggagtggaaatttgatcctatcttttgtgaggatgttgcagacatggtagactctac |
14907974 |
T |
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