View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16068_low_43 (Length: 357)
Name: NF16068_low_43
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_43 |
 | |
|
| [»] scaffold0882 (1 HSPs) |
| | |
|
| [»] scaffold0766 (1 HSPs) |
| | |
|
Alignment Details
Target: chr5 (Bit Score: 111; Significance: 6e-56; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 111; E-Value: 6e-56
Query Start/End: Original strand, 229 - 339
Target Start/End: Original strand, 21838872 - 21838982
Alignment:
| Q |
229 |
tgtttgtggttctaattctgcttgaatatcttcagaaaattgtatctttgattttaattgagggtctggtcttttgattttgggttgttgtttagtgatt |
328 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
21838872 |
tgtttgtggttctaattctgcttgaatatcttcagaaaattgtatctttgattttaattgagggtctggtcttttgattttgggttgttgtttagtgatt |
21838971 |
T |
|
| Q |
329 |
gtagtttgtat |
339 |
Q |
| |
|
||||||||||| |
|
|
| T |
21838972 |
gtagtttgtat |
21838982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 53; Significance: 2e-21; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 11 - 131
Target Start/End: Original strand, 8681749 - 8681869
Alignment:
| Q |
11 |
cagagatcaaagataagcaatgcatgcttatgttaggcgagagtggatggagaggaataaagcggaggggagagtgggttggcgtggtagcacgagtagg |
110 |
Q |
| |
|
|||| |||||||| ||| |||||||||| | ||||||||||| |||||||||||||| ||||| ||||| |||| ||| |||||||| ||| | ||||| |
|
|
| T |
8681749 |
cagaaatcaaagacaagtgatgcatgcttctattaggcgagagcggatggagaggaatgaagcgaaggggggagtaggtaggcgtggtggcaagggtagg |
8681848 |
T |
|
| Q |
111 |
agaagtcgtgatgatggtgag |
131 |
Q |
| |
|
||| |||||| |||||||||| |
|
|
| T |
8681849 |
agacgtcgtgctgatggtgag |
8681869 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 43 - 127
Target Start/End: Original strand, 7142589 - 7142673
Alignment:
| Q |
43 |
ttaggcgagagtggatggagaggaataaagcggaggggagagtgggttggcgtggtagcacgagtaggagaagtcgtgatgatgg |
127 |
Q |
| |
|
||||||||||| |||||||||||||| |||| ||||| |||| || |||||||| ||| | |||||||| |||||| |||||| |
|
|
| T |
7142589 |
ttaggcgagagcggatggagaggaatggagcgaaggggggagtaggcaggcgtggtggcaagggtaggagacgtcgtgctgatgg |
7142673 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 16 - 86
Target Start/End: Complemental strand, 18518763 - 18518693
Alignment:
| Q |
16 |
atcaaagataagcaatgcatgcttatgttaggcgagagtggatggagaggaataaagcggaggggagagtg |
86 |
Q |
| |
|
|||||||| ||| |||||||||| ||||||||||||| |||||||||||||| ||| ||||||||||||| |
|
|
| T |
18518763 |
atcaaagacaagtgatgcatgcttctgttaggcgagaggggatggagaggaatgaagtggaggggagagtg |
18518693 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 16 - 87
Target Start/End: Original strand, 43395059 - 43395130
Alignment:
| Q |
16 |
atcaaagataagcaatgcatgcttatgttaggcgagagtggatggagaggaataaagcggaggggagagtgg |
87 |
Q |
| |
|
|||||||| |||| || ||||||| ||||||||||||| |||| ||||||||| ||||||| |||||||||| |
|
|
| T |
43395059 |
atcaaagacaagcgatacatgcttctgttaggcgagagcggatagagaggaatgaagcggaagggagagtgg |
43395130 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 16 - 75
Target Start/End: Complemental strand, 26853924 - 26853865
Alignment:
| Q |
16 |
atcaaagataagcaatgcatgcttatgttaggcgagagtggatggagaggaataaagcgg |
75 |
Q |
| |
|
|||||||| |||| |||||||||| |||||||||||| |||||||||||||| |||||| |
|
|
| T |
26853924 |
atcaaagacaagcgatgcatgcttctgttaggcgagaaaggatggagaggaatgaagcgg |
26853865 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0882 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0882
Description:
Target: scaffold0882; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Complemental strand, 2535 - 2479
Alignment:
| Q |
30 |
atgcatgcttatgttaggcgagagtggatggagaggaataaagcggaggggagagtg |
86 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
2535 |
atgcatgcttctgttaggcaaaagtggatggagagtaatgaagtagaggggagagtg |
2479 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0766 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: scaffold0766
Description:
Target: scaffold0766; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 30 - 86
Target Start/End: Original strand, 868 - 924
Alignment:
| Q |
30 |
atgcatgcttatgttaggcgagagtggatggagaggaataaagcggaggggagagtg |
86 |
Q |
| |
|
|||||||||| |||||||| | ||||||||||||| ||| ||| |||||||||||| |
|
|
| T |
868 |
atgcatgcttctgttaggcaaaagtggatggagagtaatgaagtagaggggagagtg |
924 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University