View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_44 (Length: 357)
Name: NF16068_low_44
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_44 |
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Alignment Details
Target: chr7 (Bit Score: 131; Significance: 7e-68; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 131; E-Value: 7e-68
Query Start/End: Original strand, 191 - 337
Target Start/End: Original strand, 31274819 - 31274965
Alignment:
| Q |
191 |
aacttcctctaacatttcattctctctattgctctcgatccttcacttttattttgttttgttcaaatagaaatccttcatatacaaattttattttgga |
290 |
Q |
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| T |
31274819 |
aacttcctctaacatttcattctctctattgctctggatccttcacttttattttgttttgttcaaatagaaatccttcatatgtaaattttattttgga |
31274918 |
T |
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| Q |
291 |
cgtggctataatcacaccatgcctaatggtggatttgtccatgcttc |
337 |
Q |
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| T |
31274919 |
cgtggctataaccacaccatgcctaatggtggatttgtccatgcttc |
31274965 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 1 - 131
Target Start/End: Original strand, 31274690 - 31274818
Alignment:
| Q |
1 |
gaataagggacctttatctgggggatcctaaactaactttttgttgtggctaaaataacaatatnnnnnnnnnnnnnntactaaatgaaattaaagttta |
100 |
Q |
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| T |
31274690 |
gaataagggaccttcatccgggggatcctaaactaactttttgttgtggctaaaataacaacat--aaaaaaaaaaaatactaaatgaaattaaagttca |
31274787 |
T |
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| Q |
101 |
tgtattatttatggttttatttgggttagtt |
131 |
Q |
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| T |
31274788 |
tgtattatttatggtttaatttgggttagtt |
31274818 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 114 - 164
Target Start/End: Original strand, 42937397 - 42937447
Alignment:
| Q |
114 |
gttttatttgggttagttttattagctcaaatccatttttaactctaacaa |
164 |
Q |
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| T |
42937397 |
gttttgtttgggctagttttattaattcaaatccatttgtaactctaacaa |
42937447 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 114 - 211
Target Start/End: Complemental strand, 47377665 - 47377567
Alignment:
| Q |
114 |
gttttatttgggttagttttattagctcaaatccatttttaactctaacaattgcttatttgaacaaaataaacca-caacttcctctaacatttcatt |
211 |
Q |
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| T |
47377665 |
gttttatttgggcaagttttattagctcatgtctatttataaccctaacaatcgttaatttgaacaaaataagccatcaacttcttcaaaaatttcatt |
47377567 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 131 - 183
Target Start/End: Complemental strand, 3162259 - 3162206
Alignment:
| Q |
131 |
tttattagctcaaatccatttttaactc-taacaattgcttatttgaacaaaat |
183 |
Q |
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| T |
3162259 |
tttattagcccaaatctatttttaactcttaacaattgctaattcgaacaaaat |
3162206 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 159 - 223
Target Start/End: Complemental strand, 33190138 - 33190073
Alignment:
| Q |
159 |
taacaattgcttatttgaacaaaataaacca-caacttcctctaacatttcattctctctattgct |
223 |
Q |
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| T |
33190138 |
taacaattgttaatttgaacaaaatgaaccatcaacctcctctaacattttattatttctattgct |
33190073 |
T |
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