View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_low_47 (Length: 345)

Name: NF16068_low_47
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_low_47
NF16068_low_47
[»] chr6 (7 HSPs)
chr6 (15-330)||(3291896-3292211)
chr6 (19-64)||(11656079-11656124)
chr6 (19-67)||(15582219-15582267)
chr6 (20-67)||(34299928-34299975)
chr6 (19-64)||(5302288-5302333)
chr6 (19-64)||(6801867-6801912)
chr6 (23-64)||(23397753-23397794)
[»] chr4 (13 HSPs)
chr4 (19-66)||(29295161-29295208)
chr4 (19-64)||(11907738-11907783)
chr4 (19-64)||(25233119-25233164)
chr4 (19-64)||(47773158-47773203)
chr4 (22-66)||(3918982-3919026)
chr4 (22-66)||(16821474-16821518)
chr4 (22-66)||(21698651-21698695)
chr4 (21-64)||(2400739-2400782)
chr4 (22-64)||(5841570-5841612)
chr4 (19-64)||(2066728-2066773)
chr4 (19-64)||(52859933-52859978)
chr4 (19-67)||(40122994-40123042)
chr4 (35-67)||(56250386-56250418)
[»] chr7 (26 HSPs)
chr7 (19-64)||(43873867-43873912)
chr7 (19-64)||(83328-83373)
chr7 (19-64)||(759231-759276)
chr7 (19-64)||(44424089-44424134)
chr7 (19-64)||(48608811-48608856)
chr7 (34-66)||(4102043-4102075)
chr7 (19-67)||(13961902-13961950)
chr7 (12-64)||(21760117-21760169)
chr7 (19-67)||(24166931-24166979)
chr7 (19-67)||(39519285-39519333)
chr7 (22-64)||(36790682-36790724)
chr7 (19-64)||(6495073-6495118)
chr7 (19-64)||(7457560-7457605)
chr7 (19-64)||(8592580-8592625)
chr7 (19-64)||(11373568-11373613)
chr7 (19-64)||(20023161-20023206)
chr7 (19-64)||(21350766-21350811)
chr7 (19-64)||(25571364-25571409)
chr7 (19-64)||(27920930-27920975)
chr7 (19-64)||(28202449-28202494)
chr7 (19-64)||(31930642-31930687)
chr7 (19-64)||(34947444-34947489)
chr7 (19-64)||(40076262-40076307)
chr7 (19-64)||(41506205-41506250)
chr7 (28-64)||(5524324-5524360)
chr7 (28-64)||(26973966-26974002)
[»] scaffold0016 (1 HSPs)
scaffold0016 (19-67)||(76226-76274)
[»] chr8 (13 HSPs)
chr8 (23-67)||(50750-50794)
chr8 (22-64)||(39405699-39405741)
chr8 (19-64)||(26626246-26626291)
chr8 (19-64)||(39482549-39482594)
chr8 (21-64)||(9300251-9300294)
chr8 (19-66)||(14855070-14855117)
chr8 (22-67)||(396748-396793)
chr8 (22-67)||(10180084-10180129)
chr8 (19-64)||(13335154-13335199)
chr8 (23-64)||(29226665-29226706)
chr8 (22-67)||(32678350-32678395)
chr8 (19-64)||(34948819-34948864)
chr8 (19-64)||(36967311-36967356)
[»] chr2 (17 HSPs)
chr2 (19-66)||(34225525-34225572)
chr2 (22-64)||(17695265-17695307)
chr2 (19-64)||(3323403-3323448)
chr2 (19-64)||(7494970-7495015)
chr2 (19-64)||(9458396-9458441)
chr2 (19-64)||(25637417-25637462)
chr2 (19-64)||(36354573-36354618)
chr2 (24-64)||(15359225-15359265)
chr2 (22-64)||(14523506-14523548)
chr2 (22-64)||(16463624-16463666)
chr2 (19-64)||(5789778-5789823)
chr2 (19-64)||(34120568-34120613)
chr2 (19-64)||(34120652-34120697)
chr2 (19-64)||(36794221-36794266)
chr2 (19-64)||(39785522-39785567)
chr2 (19-67)||(5272269-5272317)
chr2 (19-67)||(19444080-19444128)
[»] scaffold0095 (1 HSPs)
scaffold0095 (22-64)||(50141-50183)
[»] scaffold0328 (1 HSPs)
scaffold0328 (19-64)||(8115-8160)
[»] chr5 (4 HSPs)
chr5 (19-64)||(8698245-8698290)
chr5 (25-64)||(2588200-2588239)
chr5 (22-64)||(1248738-1248780)
chr5 (19-64)||(3348261-3348306)
[»] chr3 (12 HSPs)
chr3 (19-64)||(17652690-17652735)
chr3 (19-64)||(31158643-31158688)
chr3 (22-67)||(37311883-37311928)
chr3 (19-67)||(40194436-40194484)
chr3 (22-64)||(30710586-30710628)
chr3 (19-64)||(10366782-10366827)
chr3 (15-64)||(27471272-27471321)
chr3 (19-64)||(36476521-36476566)
chr3 (19-64)||(43715243-43715288)
chr3 (19-67)||(11905757-11905805)
chr3 (19-63)||(39043888-39043932)
chr3 (19-67)||(52290828-52290876)
[»] chr1 (13 HSPs)
chr1 (19-64)||(20209976-20210021)
chr1 (19-64)||(37506061-37506106)
chr1 (19-64)||(40144983-40145028)
chr1 (19-67)||(52429276-52429324)
chr1 (25-67)||(9379166-9379208)
chr1 (22-64)||(12151125-12151167)
chr1 (27-64)||(15699077-15699114)
chr1 (19-64)||(16395181-16395226)
chr1 (19-64)||(28748928-28748973)
chr1 (19-64)||(31042734-31042779)
chr1 (19-64)||(35682929-35682974)
chr1 (19-64)||(39864048-39864093)
chr1 (19-67)||(26258077-26258125)
[»] scaffold0464 (1 HSPs)
scaffold0464 (22-64)||(5982-6024)
[»] scaffold0159 (1 HSPs)
scaffold0159 (19-64)||(34151-34196)


Alignment Details
Target: chr6 (Bit Score: 245; Significance: 1e-136; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 245; E-Value: 1e-136
Query Start/End: Original strand, 15 - 330
Target Start/End: Original strand, 3291896 - 3292211
Alignment:
Q  15 ggacaaaaataataaatactgcattgatattctaaagtgagaattattttaagnnnnnnnnnggtaaagaggcaattattatgaga--gagatagtgttt 112  Q
    |||||||||||||||||||| |||||||  |||||||||||||||||||||||         ||||||||  ||||||||||||||  ||||| || |||    
T  3291896 ggacaaaaataataaatactacattgattatctaaagtgagaattattttaagaaaaaaaatggtaaaga--caattattatgagatagagatggtattt 3291993  T
Q  113 tataattttcttctaattgtgttgatttctttccacttaatgaatcaagtctaaagtagagttagtagtactctaccatgtatcttgccttttttatttt 212  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  3291994 tataattttcttctaattgtgttgatttctttccacttaatgaatcaagtctaaagtagagttagtagtactctaccatgtatcttcccttttttatttt 3292093  T
Q  213 atttgcctcaataaagaaaagcaaattctgtttttcgttggacaaataaagaaatgaatttcattgagtgtataaaagcttacaaattagcttatatagg 312  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3292094 atttgcctcaataaagaaaagcaaattctgtttttcgttggacaaataaagaaatgaatttcattgagtgtataaaagcttacaaattagcttatatagg 3292193  T
Q  313 aaactctataatgaatac 330  Q
    ||||||||||||||||||    
T  3292194 aaactctataatgaatac 3292211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 11656079 - 11656124
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||    
T  11656079 aaaaataataaatgctgcattgatattctaaagtgacaattatttt 11656124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 15582267 - 15582219
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    ||||||||||| || ||||||||||||||||| ||| ||||||||||||    
T  15582267 aaaaataataattattgcattgatattctaaaatgacaattattttaag 15582219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 20 - 67
Target Start/End: Complemental strand, 34299975 - 34299928
Alignment:
Q  20 aaaataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    ||||||||||||  || |||||||||||||||||| ||||||||||||    
T  34299975 aaaataataaatgttgtattgatattctaaagtgacaattattttaag 34299928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 5302333 - 5302288
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||  ||||||||||||| |||||||||    
T  5302333 aaaaataataaatgctgcattagtattctaaagtgacaattatttt 5302288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 6801912 - 6801867
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  |||||||||||| |||||||| |||||||||    
T  6801912 aaaaataataaatgttgcattgatattataaagtgacaattatttt 6801867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 23397753 - 23397794
Alignment:
Q  23 ataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||  ||||||||||||||||||||| |||||||||    
T  23397753 ataataaatgttgcattgatattctaaagtgacaattatttt 23397794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 29295208 - 29295161
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaa 66  Q
    |||||||||||||||||||||| ||||||||||||| |||||||||||    
T  29295208 aaaaataataaatactgcattggtattctaaagtgataattattttaa 29295161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 11907738 - 11907783
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||    
T  11907738 aaaaataataaatgctgcattggtattctaaagtgacaattatttt 11907783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 25233164 - 25233119
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||    
T  25233164 aaaaataataaatgttgcattgatattctaaagtgacaattatttt 25233119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 47773158 - 47773203
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||    
T  47773158 aaaaataataaatgctgcattggtattctaaagtgacaattatttt 47773203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Complemental strand, 3919026 - 3918982
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattattttaa 66  Q
    ||||||||||||||||||||||||| ||||||| ||||| |||||    
T  3919026 aataataaatactgcattgatattcaaaagtgaaaattactttaa 3918982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 16821474 - 16821518
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattattttaa 66  Q
    |||||||||| |||||||| ||||||||||||| |||||||||||    
T  16821474 aataataaatgctgcattggtattctaaagtgacaattattttaa 16821518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 22 - 66
Target Start/End: Original strand, 21698651 - 21698695
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattattttaa 66  Q
    ||||||||||| |||||||||||| |||||||| |||||||||||    
T  21698651 aataataaatattgcattgatattttaaagtgacaattattttaa 21698695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 64
Target Start/End: Complemental strand, 2400782 - 2400739
Alignment:
Q  21 aaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||| |||| ||||||||||||||||||||| |||||||||    
T  2400782 aaataattaatattgcattgatattctaaagtgataattatttt 2400739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 5841570 - 5841612
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||  ||||||||||||||||||||| |||||||||    
T  5841570 aataataaatgatgcattgatattctaaagtgacaattatttt 5841612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 2066773 - 2066728
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| || ||||| ||||||||||||| |||||||||    
T  2066773 aaaaataataaatgcttcattggtattctaaagtgacaattatttt 2066728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 52859933 - 52859978
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  ||||||| ||||||||||||| |||||||||    
T  52859933 aaaaataataaatgttgcattggtattctaaagtgacaattatttt 52859978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 40122994 - 40123042
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    |||||||||||||  ||||||| |||| |||||||| ||||||||||||    
T  40122994 aaaaataataaatgttgcattggtattgtaaagtgataattattttaag 40123042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 35 - 67
Target Start/End: Original strand, 56250386 - 56250418
Alignment:
Q  35 gcattgatattctaaagtgagaattattttaag 67  Q
    |||||||||||||||||||| ||||||||||||    
T  56250386 gcattgatattctaaagtgacaattattttaag 56250418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 38; Significance: 0.000000000002; HSPs: 26)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 43873912 - 43873867
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||||||||||||||||| |||||||||    
T  43873912 aaaaataataaatgctgcattgatattctaaagtgacaattatttt 43873867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 83373 - 83328
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||    
T  83373 aaaaataataaatgctgcattggtattctaaagtgacaattatttt 83328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 759231 - 759276
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||    
T  759231 aaaaataataaatgctgcattggtattctaaagtgacaattatttt 759276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 44424134 - 44424089
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| ||||||||||||| |||||||| |||||||||    
T  44424134 aaaaataataaatgctgcattgatattttaaagtgataattatttt 44424089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 48608856 - 48608811
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||||||||||| ||||| |||||||| |||||||||    
T  48608856 aaaaataataaatactgcattaatattttaaagtgacaattatttt 48608811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 34 - 66
Target Start/End: Complemental strand, 4102075 - 4102043
Alignment:
Q  34 tgcattgatattctaaagtgagaattattttaa 66  Q
    |||||||||||||||||||||||||||||||||    
T  4102075 tgcattgatattctaaagtgagaattattttaa 4102043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 13961950 - 13961902
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    ||||| ||||||| |||||||| ||||||||||||| ||||||||||||    
T  13961950 aaaaaaaataaatgctgcattggtattctaaagtgataattattttaag 13961902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 12 - 64
Target Start/End: Original strand, 21760117 - 21760169
Alignment:
Q  12 aaaggacaaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||| ||| |||||||||  ||||||||||||||||||||| |||||||||    
T  21760117 aaaggaaaaatataataaatgttgcattgatattctaaagtgacaattatttt 21760169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 24166979 - 24166931
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    |||||||||||||| ||||||| |||| |||||||| ||||||||||||    
T  24166979 aaaaataataaatattgcattggtattgtaaagtgacaattattttaag 24166931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 39519333 - 39519285
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    |||||||| ||||| || |||||||||||||||||| ||||||||||||    
T  39519333 aaaaataacaaatattgtattgatattctaaagtgataattattttaag 39519285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 36790724 - 36790682
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||| |||||||| ||||||||||||| |||||||||    
T  36790724 aataataaatgctgcattgctattctaaagtgacaattatttt 36790682  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 6495073 - 6495118
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||| ||||||| || ||||||||||||||||||| |||||||||    
T  6495073 aaaaaaaataaatgctacattgatattctaaagtgacaattatttt 6495118  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 7457560 - 7457605
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  |||||||||||| |||||||| |||||||||    
T  7457560 aaaaataataaatgttgcattgatattgtaaagtgataattatttt 7457605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 8592580 - 8592625
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| ||||||||||||| |||| ||| |||||||||    
T  8592580 aaaaataataaatgctgcattgatattgtaaaatgaaaattatttt 8592625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 11373568 - 11373613
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| ||||||||||||| |||||| | |||||||||    
T  11373568 aaaaataataaatgctgcattgatattgtaaagtaacaattatttt 11373613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 20023206 - 20023161
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||||| |||| ||||| |||||||| |||||||||    
T  20023206 aaaaataataaatactacattaatattataaagtgacaattatttt 20023161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 21350766 - 21350811
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| |||| |||||||| |||||||||    
T  21350766 aaaaataataaatgctgcattggtattgtaaagtgacaattatttt 21350811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 25571409 - 25571364
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  ||||||| ||||||||||||| |||||||||    
T  25571409 aaaaataataaatgttgcattggtattctaaagtgacaattatttt 25571364  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 27920975 - 27920930
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  |||||| |||||||||||||| |||||||||    
T  27920975 aaaaataataaatgttgcattaatattctaaagtgacaattatttt 27920930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 28202449 - 28202494
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| ||| |||| ||||||||||||| |||||||||    
T  28202449 aaaaataataaatgctgtattggtattctaaagtgacaattatttt 28202494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 31930642 - 31930687
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  | ||||||||||||||||||| |||||||||    
T  31930642 aaaaataataaatgtttcattgatattctaaagtgacaattatttt 31930687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 34947489 - 34947444
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  ||||||| ||||||||||||| |||||||||    
T  34947489 aaaaataataaatgttgcattggtattctaaagtgacaattatttt 34947444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 40076307 - 40076262
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| |||| |||||||| |||||||||    
T  40076307 aaaaataataaatgctgcattggtattataaagtgacaattatttt 40076262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 41506205 - 41506250
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||| ||||||||| |||||||||||| |||||||| |||||||||    
T  41506205 aaaattaataaatattgcattgatattgtaaagtgataattatttt 41506250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 5524360 - 5524324
Alignment:
Q  28 aaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||| ||||||||||||| ||||||||||||||||||    
T  5524360 aaatgctgcattgatattgtaaagtgagaattatttt 5524324  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 28 - 64
Target Start/End: Complemental strand, 26974002 - 26973966
Alignment:
Q  28 aaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||||||| |||||||| |||||||||    
T  26974002 aaatactgcattgatattgtaaagtgacaattatttt 26973966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0016 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0016
Description:

Target: scaffold0016; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 76274 - 76226
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    ||||||||||||||||||||||||||| || ||||| ||||||||||||    
T  76274 aaaaataataaatactgcattgatattatagagtgacaattattttaag 76226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000008; HSPs: 13)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 23 - 67
Target Start/End: Complemental strand, 50794 - 50750
Alignment:
Q  23 ataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    ||||||||| |||||||||||||||||||||| ||||||||||||    
T  50794 ataataaatgctgcattgatattctaaagtgacaattattttaag 50750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 39405741 - 39405699
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||| |||||||||||||||||||||| |||||||||    
T  39405741 aataataaatgctgcattgatattctaaagtgacaattatttt 39405699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 26626246 - 26626291
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| ||||||||||||| |||||||| |||||||||    
T  26626246 aaaaataataaatgctgcattgatattttaaagtgacaattatttt 26626291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 39482594 - 39482549
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||||||||||| |||| |||||||| |||||||||    
T  39482594 aaaaataataaatactgcattggtattgtaaagtgacaattatttt 39482549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 21 - 64
Target Start/End: Original strand, 9300251 - 9300294
Alignment:
Q  21 aaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||||||||| |||| |||||||| |||||||||    
T  9300251 aaataataaatactgcattggtattgtaaagtgacaattatttt 9300294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 19 - 66
Target Start/End: Original strand, 14855070 - 14855117
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaa 66  Q
    |||||||||||||| |||||| ||||| |||||||| |||||||||||    
T  14855070 aaaaataataaatattgcattaatattgtaaagtgacaattattttaa 14855117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 396748 - 396793
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    ||||||||||  ||||||| ||||||||||||| ||||||||||||    
T  396748 aataataaatgttgcattggtattctaaagtgacaattattttaag 396793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Original strand, 10180084 - 10180129
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    ||||||||||  ||||||| ||||||||||||| ||||||||||||    
T  10180084 aataataaatgttgcattggtattctaaagtgacaattattttaag 10180129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 13335199 - 13335154
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  ||||||| ||||||||||||| |||||||||    
T  13335199 aaaaataataaatgttgcattggtattctaaagtgacaattatttt 13335154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 23 - 64
Target Start/End: Original strand, 29226665 - 29226706
Alignment:
Q  23 ataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||| ||||||||||||| |||||||| |||||||||    
T  29226665 ataataaatgctgcattgatattttaaagtgacaattatttt 29226706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 32678395 - 32678350
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    ||||||||||  |||||||||||| |||||||| ||||||||||||    
T  32678395 aataataaatgatgcattgatattttaaagtgacaattattttaag 32678350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 34948819 - 34948864
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||| ||||||| ||||||||||| | |||||||||    
T  34948819 aaaaataataaatattgcattggtattctaaagtaacaattatttt 34948864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 36967356 - 36967311
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  ||||||||||||||||||| | |||||||||    
T  36967356 aaaaataataaattatgcattgatattctaaagtaacaattatttt 36967311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 36; Significance: 0.00000000003; HSPs: 17)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 19 - 66
Target Start/End: Complemental strand, 34225572 - 34225525
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaa 66  Q
    |||||||||||||||||||||| ||||| ||||||| |||||||||||    
T  34225572 aaaaataataaatactgcattggtattccaaagtgacaattattttaa 34225525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 17695307 - 17695265
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||| |||||||||||||||||||||| |||||||||    
T  17695307 aataataaatgctgcattgatattctaaagtgacaattatttt 17695265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 3323403 - 3323448
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| |||| ||||||||||||||||||    
T  3323403 aaaaataataaatgctgcattggtattgtaaagtgagaattatttt 3323448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 7494970 - 7495015
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||    
T  7494970 aaaaataataaatgctgcattggtattctaaagtgacaattatttt 7495015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 9458396 - 9458441
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||    
T  9458396 aaaaataataaatgctgcattggtattctaaagtgacaattatttt 9458441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 25637462 - 25637417
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||    
T  25637462 aaaaataataaatgctgcattggtattctaaagtgacaattatttt 25637417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 36354573 - 36354618
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||    
T  36354573 aaaaataataaattctgcattggtattctaaagtgacaattatttt 36354618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 24 - 64
Target Start/End: Original strand, 15359225 - 15359265
Alignment:
Q  24 taataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||||||||||||||||||| | |||||||||    
T  15359225 taataaatactgcattgatattctaaagtaacaattatttt 15359265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 14523506 - 14523548
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||  ||||||||||||||||||||| |||||||||    
T  14523506 aataataaatgttgcattgatattctaaagtgacaattatttt 14523548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 16463666 - 16463624
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||| |||||||| ||||||||||||| |||||||||    
T  16463666 aataataaatgctgcattggtattctaaagtgacaattatttt 16463624  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 5789778 - 5789823
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  |||||||||||| |||||||| |||||||||    
T  5789778 aaaaataataaatgatgcattgatattgtaaagtgacaattatttt 5789823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 34120568 - 34120613
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| |||| |||||||| |||||||||    
T  34120568 aaaaataataaatgctgcattggtattttaaagtgacaattatttt 34120613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 34120652 - 34120697
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| |||| |||||||| |||||||||    
T  34120652 aaaaataataaatgctgcattggtattttaaagtgacaattatttt 34120697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 36794266 - 36794221
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| |||| |||||||| |||||||||    
T  36794266 aaaaataataaatgctgcattggtattttaaagtgataattatttt 36794221  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 39785567 - 39785522
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||| ||||| |||||||| ||||||||||||| |||||||||    
T  39785567 aaaaatagtaaatgctgcattggtattctaaagtgacaattatttt 39785522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 5272269 - 5272317
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    |||||||||||||  ||||||  ||||||||||||| ||||||||||||    
T  5272269 aaaaataataaatgttgcatttgtattctaaagtgacaattattttaag 5272317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 19444128 - 19444080
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    |||||||||||||  |||||||||||| | |||||| ||||||||||||    
T  19444128 aaaaataataaatgttgcattgatattttgaagtgacaattattttaag 19444080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0095 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 50183 - 50141
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||| |||||||||||||||||||||| |||||||||    
T  50183 aataataaatgctgcattgatattctaaagtgacaattatttt 50141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0328 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0328
Description:

Target: scaffold0328; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 8115 - 8160
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||    
T  8115 aaaaataataaatgctgcattggtattctaaagtgacaattatttt 8160  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 8698290 - 8698245
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||||| |||||||||| |||||||| |||||||||    
T  8698290 aaaaataataaatactacattgatattgtaaagtgacaattatttt 8698245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 25 - 64
Target Start/End: Original strand, 2588200 - 2588239
Alignment:
Q  25 aataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||| |||||||||||||||||||||| |||||||||    
T  2588200 aataaatgctgcattgatattctaaagtgacaattatttt 2588239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Original strand, 1248738 - 1248780
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||  ||||||||||||||||||||| |||||||||    
T  1248738 aataataaatgttgcattgatattctaaagtgacaattatttt 1248780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 3348261 - 3348306
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| ||||||||| ||| |||||||||    
T  3348261 aaaaataataaatgctgcattggtattctaaaatgacaattatttt 3348306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 17652735 - 17652690
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||| |||||||||||||| |||||||||||||| |||||||||    
T  17652735 aaaaattataaatactgcattaatattctaaagtgacaattatttt 17652690  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 31158643 - 31158688
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||||||||||  |||| ||||||||||||||||||    
T  31158643 aaaaataataaatactgcatttgtattgtaaagtgagaattatttt 31158688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 22 - 67
Target Start/End: Complemental strand, 37311928 - 37311883
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    |||||||||| ||||||||||||| |||||||| ||||||||||||    
T  37311928 aataataaatgctgcattgatattgtaaagtgacaattattttaag 37311883  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 40194484 - 40194436
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    ||||||||| |||||| ||||||||||||||| ||| ||||||||||||    
T  40194484 aaaaataatgaatactacattgatattctaaattgacaattattttaag 40194436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 30710628 - 30710586
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||  ||||||||||||||||||||| |||||||||    
T  30710628 aataataaatgttgcattgatattctaaagtgacaattatttt 30710586  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 10366782 - 10366827
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  ||||||| ||||||||||||| |||||||||    
T  10366782 aaaaataataaatgttgcattggtattctaaagtgacaattatttt 10366827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 15 - 64
Target Start/End: Complemental strand, 27471321 - 27471272
Alignment:
Q  15 ggacaaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||||||| ||| |||| |||| |||||||| |||||||||    
T  27471321 ggacaaaaataataaatgctgtattggtattataaagtgacaattatttt 27471272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 36476566 - 36476521
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||| |||||||| |||||||| ||||||||||||| |||||||||    
T  36476566 aaaagtaataaatgctgcattggtattctaaagtgacaattatttt 36476521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 43715288 - 43715243
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  | ||||||||||||||||||| |||||||||    
T  43715288 aaaaataataaatgttacattgatattctaaagtgacaattatttt 43715243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 11905805 - 11905757
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    |||||||||||||  ||||||||||||||||| | | ||||||||||||    
T  11905805 aaaaataataaatgttgcattgatattctaaaataaaaattattttaag 11905757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 63
Target Start/End: Original strand, 39043888 - 39043932
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattt 63  Q
    |||||||||||||  ||||||| ||||||||||||| ||||||||    
T  39043888 aaaaataataaatgttgcattggtattctaaagtgacaattattt 39043932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 52290876 - 52290828
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    ||||||||||||| |||||||| ||||||||||| | |||||| |||||    
T  52290876 aaaaataataaatgctgcattggtattctaaagtcacaattatcttaag 52290828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 13)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 20209976 - 20210021
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| ||||||||||||| |||||||||    
T  20209976 aaaaataataaatgctgcattggtattctaaagtgacaattatttt 20210021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 37506106 - 37506061
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||    
T  37506106 aaaaataataaatgttgcattgatattctaaagtgacaattatttt 37506061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 40144983 - 40145028
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  ||||||||||||||||||||| |||||||||    
T  40144983 aaaaataataaatgttgcattgatattctaaagtgacaattatttt 40145028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 19 - 67
Target Start/End: Complemental strand, 52429324 - 52429276
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    |||||||||||||  |||||||||||| |||||||| ||||||||||||    
T  52429324 aaaaataataaatgttgcattgatattgtaaagtgacaattattttaag 52429276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 25 - 67
Target Start/End: Complemental strand, 9379208 - 9379166
Alignment:
Q  25 aataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    |||||||| ||||||||||||||||| ||| ||||||||||||    
T  9379208 aataaatattgcattgatattctaaaatgacaattattttaag 9379166  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 12151167 - 12151125
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||| ||||||||||||| |||||||| |||||||||    
T  12151167 aataataaatgctgcattgatattataaagtgacaattatttt 12151125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 15699114 - 15699077
Alignment:
Q  27 taaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||| |||||||||||||||||||||| |||||||||    
T  15699114 taaatgctgcattgatattctaaagtgacaattatttt 15699077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 16395181 - 16395226
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| || ||||| ||||||||||||| |||||||||    
T  16395181 aaaaataataaatcctacattggtattctaaagtgacaattatttt 16395226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 28748973 - 28748928
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    ||||||||||||| |||||||| |||| |||||||| |||||||||    
T  28748973 aaaaataataaatgctgcattgctattataaagtgataattatttt 28748928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 31042779 - 31042734
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  || |||||||||||||||||| |||||||||    
T  31042779 aaaaataataaatgatgtattgatattctaaagtgacaattatttt 31042734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 35682929 - 35682974
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||| ||||||||||||||||| ||  |||||||||    
T  35682929 aaaaataataaatattgcattgatattctaaattggcaattatttt 35682974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Complemental strand, 39864093 - 39864048
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  |||||||||||| |||||||| |||||||||    
T  39864093 aaaaataataaatgttgcattgatattgtaaagtgacaattatttt 39864048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 67
Target Start/End: Original strand, 26258077 - 26258125
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattattttaag 67  Q
    ||||| || ||||| || |||||||||||||||||| ||||||||||||    
T  26258077 aaaaaaaacaaatattgtattgatattctaaagtgacaattattttaag 26258125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0464 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0464
Description:

Target: scaffold0464; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 22 - 64
Target Start/End: Complemental strand, 6024 - 5982
Alignment:
Q  22 aataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||| ||| |||||||||||||||||| |||||||||    
T  6024 aataataaatgctggattgatattctaaagtgataattatttt 5982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0159 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 64
Target Start/End: Original strand, 34151 - 34196
Alignment:
Q  19 aaaaataataaatactgcattgatattctaaagtgagaattatttt 64  Q
    |||||||||||||  |||||||||||| |||||||| |||||||||    
T  34151 aaaaataataaatgatgcattgatattgtaaagtgacaattatttt 34196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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