View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_low_48 (Length: 336)

Name: NF16068_low_48
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_low_48
NF16068_low_48
[»] chr1 (2 HSPs)
chr1 (18-323)||(12190983-12191288)
chr1 (239-320)||(12185658-12185737)
[»] chr3 (7 HSPs)
chr3 (84-188)||(5499120-5499223)
chr3 (91-184)||(1655103-1655196)
chr3 (91-181)||(2550692-2550782)
chr3 (91-181)||(13846518-13846608)
chr3 (91-184)||(7407233-7407326)
chr3 (108-184)||(7395662-7395738)
chr3 (22-54)||(5498686-5498718)
[»] chr7 (3 HSPs)
chr7 (83-184)||(19747744-19747845)
chr7 (91-184)||(4684882-4684975)
chr7 (189-238)||(19747901-19747950)
[»] chr5 (4 HSPs)
chr5 (91-184)||(7411840-7411933)
chr5 (91-184)||(5077293-5077386)
chr5 (189-238)||(5077188-5077237)
chr5 (189-229)||(7411989-7412029)
[»] chr8 (4 HSPs)
chr8 (91-184)||(28248559-28248652)
chr8 (91-181)||(45355596-45355686)
chr8 (91-184)||(25639335-25639428)
chr8 (188-238)||(28248453-28248503)
[»] chr4 (2 HSPs)
chr4 (91-181)||(43600793-43600883)
chr4 (136-189)||(1472998-1473051)
[»] chr6 (2 HSPs)
chr6 (91-184)||(15362243-15362336)
chr6 (91-184)||(16735332-16735425)
[»] chr2 (1 HSPs)
chr2 (91-184)||(31342211-31342304)
[»] scaffold0576 (1 HSPs)
scaffold0576 (91-184)||(7227-7320)


Alignment Details
Target: chr1 (Bit Score: 290; Significance: 1e-163; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 18 - 323
Target Start/End: Original strand, 12190983 - 12191288
Alignment:
Q  18 ttatggtctttaaatggttcaacgatttcataaaatatataaattaacttgattgactatcaggttgcacaatagaagtgcaagccttttctttaatctc 117  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12190983 ttatggtctttaaacggttcaacgatttcataaaatatataaattaacttgattgactatcaggctgcacaatagaagtgcaagccttttctttaatctc 12191082  T
Q  118 cgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagacatatcttgtcacgagaatcattatcaattggatgt 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  12191083 cgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagacatatcttgtcacgagaatcattatcaattggatgt 12191182  T
Q  218 ggcaaaactgaaactgaccaattggtagagacttcactctttgtaaccgtcgatggcagaaagttgaatattatgcgtttctttcttggctcttgatgca 317  Q
    |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  12191183 ggcaaaactgaaactgaccaattggtagagacttcactctttgtaatcgtcgatggcagaaagtcgaatattatgcgtttctttcttggctcttgatgca 12191282  T
Q  318 gtctct 323  Q
    ||||||    
T  12191283 gtctct 12191288  T

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Target: chr1; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 239 - 320
Target Start/End: Original strand, 12185658 - 12185737
Alignment:
Q  239 ttggtagagacttcactctttgtaaccgtcgatggcagaaagttgaatattatgcgtttctttcttggctcttgatgcagtc 320  Q
    ||||||||||||||||||||||||| |||||||| || ||||| |||||   || |||||||||||||||||||||||||||    
T  12185658 ttggtagagacttcactctttgtaatcgtcgatgacaaaaagtcgaata--ctgtgtttctttcttggctcttgatgcagtc 12185737  T

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Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 84 - 188
Target Start/End: Original strand, 5499120 - 5499223
Alignment:
Q  84 gcacaatagaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagaca 183  Q
    ||||||||||| ||||| ||||||||||||||||| |||| ||| |||||| ||||  ||||||||||||||||||||||||||||||||||||||||||    
T  5499120 gcacaatagaaatgcaatccttttctttaatctcctttgtattgcggcgttgcttac-cgcaagcatcttcataatgctctgcctgcaagattgcagaca 5499218  T
Q  184 tatct 188  Q
    |||||    
T  5499219 tatct 5499223  T

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Target: chr3; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 1655103 - 1655196
Alignment:
Q  91 agaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagacat 184  Q
    |||| |||||||||| |||||||||||| |||| ||||| |||| ||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  1655103 agaaatgcaagccttctctttaatctcctttgtcttgtgtcgttgcttatccgcaatcatcttcataatgttctgcctgcaagattgcagacat 1655196  T

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Target: chr3; HSP #3
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 2550692 - 2550782
Alignment:
Q  91 agaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcaga 181  Q
    |||| |||||||||| |||||||||||| |||| ||||| |||| ||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  2550692 agaaatgcaagccttctctttaatctcctttgtcttgtgccgttgcttatccgcaatcatcttcataatgttctgcctgcaagattgcaga 2550782  T

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Target: chr3; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 13846518 - 13846608
Alignment:
Q  91 agaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcaga 181  Q
    |||| |||||||||| |||||||||||| |||| ||||| |||| ||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  13846518 agaaatgcaagccttctctttaatctcctttgtcttgtgccgttgcttatccgcaatcatcttcataatgttctgcctgcaagattgcaga 13846608  T

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Target: chr3; HSP #5
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 7407326 - 7407233
Alignment:
Q  91 agaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagacat 184  Q
    |||| |||||||||| |||||||||||| |||| ||||| |||| ||||| ||||| ||||||||||||| |||||| ||||||||||||||||    
T  7407326 agaaatgcaagccttctctttaatctcctttgtcttgtgccgttgcttatccgcaatcatcttcataatgttctgccagcaagattgcagacat 7407233  T

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Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 108 - 184
Target Start/End: Complemental strand, 7395738 - 7395662
Alignment:
Q  108 ctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagacat 184  Q
    ||||||||||| |||| || || | || ||||| ||||| ||||||||||||| |||||| ||||||||||||||||    
T  7395738 ctttaatctcctttgtcttatgccattgcttatccgcaatcatcttcataatgttctgccagcaagattgcagacat 7395662  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 22 - 54
Target Start/End: Original strand, 5498686 - 5498718
Alignment:
Q  22 ggtctttaaatggttcaacgatttcataaaata 54  Q
    |||||||||| ||||||||||||||||||||||    
T  5498686 ggtctttaaacggttcaacgatttcataaaata 5498718  T

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Target: chr7 (Bit Score: 62; Significance: 9e-27; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 83 - 184
Target Start/End: Original strand, 19747744 - 19747845
Alignment:
Q  83 tgcacaatagaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagac 182  Q
    |||||| ||||| ||||| |||| |||||||||||| |||| |||||||||| ||||| ||||||||||||||||||| | |||||||||||||||||||    
T  19747744 tgcacattagaaatgcaatccttctctttaatctcctttgtcttgtggcgttgcttatccgcaagcatcttcataatgttttgcctgcaagattgcagac 19747843  T
Q  183 at 184  Q
    ||    
T  19747844 at 19747845  T

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Target: chr7; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 4684975 - 4684882
Alignment:
Q  91 agaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagacat 184  Q
    |||| |||||||||| |||||||||||| |||| ||||| |||| ||||| ||||| ||||||||||||| |||||| ||||||||||||||||    
T  4684975 agaaatgcaagccttctctttaatctcctttgtcttgtgtcgttgcttatccgcaatcatcttcataatgttctgccagcaagattgcagacat 4684882  T

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Target: chr7; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 189 - 238
Target Start/End: Original strand, 19747901 - 19747950
Alignment:
Q  189 tgtcacgagaatcattatcaattggatgtggcaaaactgaaactgaccaa 238  Q
    ||||| |||||||||||||||||| ||||||| ||||||||||| |||||    
T  19747901 tgtcatgagaatcattatcaattgaatgtggccaaactgaaacttaccaa 19747950  T

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Target: chr5 (Bit Score: 62; Significance: 9e-27; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 7411840 - 7411933
Alignment:
Q  91 agaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagacat 184  Q
    |||| |||||||||| |||||||||||| |||| |||||||||| ||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  7411840 agaaatgcaagccttctctttaatctcctttgtcttgtggcgttgcttatccgcaatcatcttcataatgttctgcctgcaagattgcagacat 7411933  T

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Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 5077386 - 5077293
Alignment:
Q  91 agaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagacat 184  Q
    |||| |||||||||| ||||||| |||| |||| |||||||||| ||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  5077386 agaaatgcaagccttctctttaacctcctttgtcttgtggcgttgcttatccgcaatcatcttcataatgttctgcctgcaagattgcagacat 5077293  T

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Target: chr5; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 5077237 - 5077188
Alignment:
Q  189 tgtcacgagaatcattatcaattggatgtggcaaaactgaaactgaccaa 238  Q
    ||||| |||||||||||||||||| ||||||||||||||||||| |||||    
T  5077237 tgtcatgagaatcattatcaattgaatgtggcaaaactgaaacttaccaa 5077188  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 189 - 229
Target Start/End: Original strand, 7411989 - 7412029
Alignment:
Q  189 tgtcacgagaatcattatcaattggatgtggcaaaactgaa 229  Q
    ||||| ||||||||||||||| || ||||||||||||||||    
T  7411989 tgtcatgagaatcattatcaactgaatgtggcaaaactgaa 7412029  T

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Target: chr8 (Bit Score: 58; Significance: 2e-24; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 28248652 - 28248559
Alignment:
Q  91 agaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagacat 184  Q
    |||| |||||||||| |||||||||||| |||| ||||| |||| ||||| ||||| ||||||||||||| |||||||||||||||||||||||    
T  28248652 agaaatgcaagccttctctttaatctcctttgtcttgtgtcgttgcttatccgcaatcatcttcataatgttctgcctgcaagattgcagacat 28248559  T

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Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 181
Target Start/End: Complemental strand, 45355686 - 45355596
Alignment:
Q  91 agaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcaga 181  Q
    |||| |||||||||| |||||||||||| |||| ||||| |||| ||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  45355686 agaaatgcaagccttctctttaatctcctttgtcttgtgccgttgcttatccgcaatcatcttcataatgttctgcctgcaagattgcaga 45355596  T

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Target: chr8; HSP #3
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 25639335 - 25639428
Alignment:
Q  91 agaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagacat 184  Q
    |||| |||||||||| |||||||||||| |||| ||||| |||| ||||| ||||| ||||||||||||| |||||| ||||||||||||||||    
T  25639335 agaaatgcaagccttctctttaatctcctttgtcttgtgccgttgcttatccgcaatcatcttcataatgttctgccagcaagattgcagacat 25639428  T

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Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 238
Target Start/End: Complemental strand, 28248503 - 28248453
Alignment:
Q  188 ttgtcacgagaatcattatcaattggatgtggcaaaactgaaactgaccaa 238  Q
    |||||| || ||||||||||||||| ||||||||||||||||||| |||||    
T  28248503 ttgtcatgaaaatcattatcaattgaatgtggcaaaactgaaacttaccaa 28248453  T

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Target: chr4 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 181
Target Start/End: Original strand, 43600793 - 43600883
Alignment:
Q  91 agaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcaga 181  Q
    |||| |||||||||| |||||||||||| |||| ||||| |||| ||||| ||||| ||||||||||||| ||||||||||||||||||||    
T  43600793 agaaatgcaagccttctctttaatctcctttgtcttgtgccgttgcttatccgcaatcatcttcataatgttctgcctgcaagattgcaga 43600883  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 136 - 189
Target Start/End: Complemental strand, 1473051 - 1472998
Alignment:
Q  136 cttatacgcaagcatcttcataatgctctgcctgcaagattgcagacatatctt 189  Q
    ||||| |||||||||||||| || |||||||||||| |||| ||| ||||||||    
T  1473051 cttatccgcaagcatcttcacaaagctctgcctgcaggattccagccatatctt 1472998  T

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Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 15362243 - 15362336
Alignment:
Q  91 agaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagacat 184  Q
    |||| |||||||||| |||||||||||| |||| ||||| |||| ||||| ||||| ||||||||||||| |||||| ||||||||||||||||    
T  15362243 agaaatgcaagccttctctttaatctcctttgtcttgtgccgttgcttatccgcaatcatcttcataatgttctgccagcaagattgcagacat 15362336  T

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Target: chr6; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 16735332 - 16735425
Alignment:
Q  91 agaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagacat 184  Q
    |||| |||||||||| |||||||||||| |||| ||||| |||| ||||| ||||| ||||||||||||| |||||| ||||||||||||||||    
T  16735332 agaaatgcaagccttctctttaatctcctttgtcttgtgccgttgcttatccgcaatcatcttcataatgttctgccagcaagattgcagacat 16735425  T

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Target: chr2 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 91 - 184
Target Start/End: Complemental strand, 31342304 - 31342211
Alignment:
Q  91 agaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagacat 184  Q
    |||| |||||||||| |||||||||||| |||| ||||| |||| ||||| ||||| ||||||||||||| |||||| ||||||||||||||||    
T  31342304 agaaatgcaagccttctctttaatctcctttgtcttgtgccgttgcttatccgcaatcatcttcataatgttctgccagcaagattgcagacat 31342211  T

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Target: scaffold0576 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 91 - 184
Target Start/End: Original strand, 7227 - 7320
Alignment:
Q  91 agaagtgcaagccttttctttaatctccgttgtgttgtggcgttacttatacgcaagcatcttcataatgctctgcctgcaagattgcagacat 184  Q
    |||| |||||||||| |||||||||||| |||| ||||| |||| ||||| ||||| ||||||||||||| || | | ||||||||||||||||    
T  7227 agaaatgcaagccttctctttaatctcctttgtcttgtgccgttgcttatccgcaatcatcttcataatgttccgacagcaagattgcagacat 7320  T

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