View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_50 (Length: 328)
Name: NF16068_low_50
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_50 |
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Alignment Details
Target: chr8 (Bit Score: 134; Significance: 1e-69; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 160 - 321
Target Start/End: Complemental strand, 36920850 - 36920689
Alignment:
| Q |
160 |
tttatgctgaaataataagcaactgcaacaaccaatgttttgttttaaatcttctgtttttggtgtacttgtgattgagacatattc--cctatattgag |
257 |
Q |
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| T |
36920850 |
tttatgctgaaataataagcaactgcaacaaccaatgttttgttttaaatcttctgtttttggtgtacttgtgattgagacatattcctcctatattgag |
36920751 |
T |
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| Q |
258 |
tttgtttcttatagcttaaagatagaagaacaaattcctggaccacgtaatttgtttcatttca |
321 |
Q |
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| T |
36920750 |
tttgtttct--tagcttaaagatagaagaaaaaattcctggaccacgtaatttgtttcttttca |
36920689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 89; E-Value: 7e-43
Query Start/End: Original strand, 17 - 105
Target Start/End: Complemental strand, 36921032 - 36920944
Alignment:
| Q |
17 |
aaaagcaatactaaatatatataccacttcaacacacaatatattctctatccggacacaattaatactaactttcacacttattaatt |
105 |
Q |
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| T |
36921032 |
aaaagcaatactaaatatatataccacttcaacacacaatatattctctatccggacacaattaatactaactttcacacttattaatt |
36920944 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 101 - 135
Target Start/End: Complemental strand, 36920910 - 36920876
Alignment:
| Q |
101 |
taattgagtttaaactttaaagaaatctaaacacc |
135 |
Q |
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| T |
36920910 |
taattgagtttaaactttaaagaaatctaaacacc |
36920876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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