View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_low_54 (Length: 325)

Name: NF16068_low_54
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_low_54
NF16068_low_54
[»] chr5 (2 HSPs)
chr5 (15-307)||(9838930-9839215)
chr5 (195-230)||(9839238-9839273)
[»] chr7 (2 HSPs)
chr7 (113-174)||(6852314-6852375)
chr7 (195-230)||(6852514-6852549)


Alignment Details
Target: chr5 (Bit Score: 220; Significance: 1e-121; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 15 - 307
Target Start/End: Original strand, 9838930 - 9839215
Alignment:
Q  15 ttatacttaggtaggaatgtataagaagcatgttttgtttcctatgtttctaatggatttaaatattggtagcaagagatagtgctgataaaaagtggag 114  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9838930 ttatacttaggtaggaatgtataagaagcatgttttgtttcctatgtttctaatggatttaaatattggtagcaagagatagtgctgataaaaagtggag 9839029  T
Q  115 tgaaaatcattgcacaaacaaagaaagtgggagaaaatatggtcctgctatggcagccttccttttttactttctttcttcaattccaaatccactaact 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9839030 tgaaaatcattgcacaaacaaagaaagtgggagaaaatatggtcctgctatggcagccttccttttttactttctttcttcaattccaaatccactaact 9839129  T
Q  215 caatttccatggacttnnnnnnnnnnnnnnnnnnntgtttcttaaacttggtcaacaaaactcaacta-ttttttattagtcttggtcaatacc 307  Q
    ||||||||||||||||                   ||||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9839130 caatttccatggactt--------tatatatatattgtttattaaacttggtcaacaaaactcaactatttttttattagtcttggtcaatacc 9839215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 9839238 - 9839273
Alignment:
Q  195 caattccaaatccactaactcaatttccatggactt 230  Q
    ||||||||||||||||||||||||||||||| ||||    
T  9839238 caattccaaatccactaactcaatttccatgaactt 9839273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 46; Significance: 3e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 113 - 174
Target Start/End: Original strand, 6852314 - 6852375
Alignment:
Q  113 agtgaaaatcattgcacaaacaaagaaagtgggagaaaatatggtcctgctatggcagcctt 174  Q
    ||||||||| |||||||||||||||||||||||||||| | ||||| |||||||||||||||    
T  6852314 agtgaaaatgattgcacaaacaaagaaagtgggagaaattgtggtcatgctatggcagcctt 6852375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 195 - 230
Target Start/End: Original strand, 6852514 - 6852549
Alignment:
Q  195 caattccaaatccactaactcaatttccatggactt 230  Q
    ||||||||||||||||||||||||||||||||||||    
T  6852514 caattccaaatccactaactcaatttccatggactt 6852549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University