View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_low_55 (Length: 323)

Name: NF16068_low_55
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_low_55
NF16068_low_55
[»] chr5 (6 HSPs)
chr5 (14-306)||(40181139-40181431)
chr5 (106-254)||(38605675-38605820)
chr5 (95-183)||(40180547-40180635)
chr5 (38-174)||(41885856-41885992)
chr5 (115-246)||(38604989-38605120)
chr5 (196-238)||(41885995-41886037)
[»] chr8 (5 HSPs)
chr8 (63-251)||(44459540-44459725)
chr8 (63-251)||(44467073-44467258)
chr8 (94-254)||(44460273-44460430)
chr8 (94-254)||(44467806-44467963)
chr8 (115-254)||(34502246-34502382)
[»] chr1 (1 HSPs)
chr1 (94-254)||(46359143-46359300)
[»] chr6 (1 HSPs)
chr6 (106-254)||(410919-411068)


Alignment Details
Target: chr5 (Bit Score: 265; Significance: 1e-148; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 14 - 306
Target Start/End: Complemental strand, 40181431 - 40181139
Alignment:
Q  14 atattggccgctatgaaactgactttcttaacgcaaggattctaaataaactcatagaatccttctctgttatggggcagcaaggaaaggcagcacttga 113  Q
    ||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||    
T  40181431 atattggccgctatgaaactgactttcttaatgcaaggattctcaataaactcatagaatccttctcagttatggggcagcaaggaaaggcagcacttga 40181332  T
Q  114 tgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgat 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181331 tgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacatattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgat 40181232  T
Q  214 atgatccaccaaacagcttctatctatcaaaagttgctgctactccatgatgatgatcaagaagaatacaaccaccttcttccttgttatgac 306  Q
    |||||||||||| |||  |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  40181231 atgatccaccaagcagagtctatctatcaaaagttgctgctactccatgatgatgatcaagaagaatacaaccaccttcttccttgttatgac 40181139  T

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Target: chr5; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 106 - 254
Target Start/End: Complemental strand, 38605820 - 38605675
Alignment:
Q  106 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgta 205  Q
    |||||||| ||||||||||  ||||| || ||||||||||||||||||||||| || ||||||| |||||| |||||||||||   || ||||| |||||    
T  38605820 gcacttgaagtttttcatatgtttgaggtctttcaatgtgtgccaaatcaagacacatattactttacacttcaagctctttt---gaccacaacgtgta 38605724  T
Q  206 gtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 254  Q
    |||||||||| ||||||||| |  ||||||||| |||||| ||||||||    
T  38605723 gtgctgatatcatccaccaagcctcttctatctgtcaaaacttgctgct 38605675  T

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Target: chr5; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 183
Target Start/End: Complemental strand, 40180635 - 40180547
Alignment:
Q  95 aaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagct 183  Q
    |||| ||||| |||||||||||||||||||| ||||| || |||||||||||||||||||||||||| |||  || |||||||||||||    
T  40180635 aagggaaggctgcacttgatgtttttcataaatttgaggtctttcaatgtgtgccaaatcaagatacatatatctttacactgcaagct 40180547  T

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Target: chr5; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 38 - 174
Target Start/End: Original strand, 41885856 - 41885992
Alignment:
Q  38 ttcttaacgcaaggattctaaataaactcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatt 137  Q
    ||||||||||  |||||||||||||||| ||||||| ||||||  |||||||||   |||| || || ||||  |||||||||||||| ||||| |  ||    
T  41885856 ttcttaacgctcggattctaaataaactaatagaattcttctcaattatggggcgagaagggaaagctgcacacgatgtttttcataaatttgaggcttt 41885955  T
Q  138 tcaatgtgtgccaaatcaagatacttattactataca 174  Q
    |||||||| ||||||||||||||| ||||||| ||||    
T  41885956 tcaatgtgagccaaatcaagatacatattactttaca 41885992  T

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Target: chr5; HSP #5
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 115 - 246
Target Start/End: Complemental strand, 38605120 - 38604989
Alignment:
Q  115 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 214  Q
    ||||||||||| ||||| || ||||| |||||||| ||||||||| | |||  || ||||||| |||||||||| | ||  ||||| || ||||||||||    
T  38605120 gtttttcataaatttgaggtctttcagtgtgtgcctaatcaagattcatatatctttacactggaagctctttttaagacaacaagttgcagtgctgata 38605021  T
Q  215 tgatccaccaaacagcttctatctatcaaaag 246  Q
    || |||| ||| | |||||||||| |||||||    
T  38605020 tgctccagcaagccgcttctatctgtcaaaag 38604989  T

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Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 196 - 238
Target Start/End: Original strand, 41885995 - 41886037
Alignment:
Q  196 acaaggtgtagtgctgatatgatccaccaaacagcttctatct 238  Q
    |||||| |||||| |||||||||||||||||| ||||||||||    
T  41885995 acaaggagtagtgatgatatgatccaccaaactgcttctatct 41886037  T

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Target: chr8 (Bit Score: 47; Significance: 8e-18; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 63 - 251
Target Start/End: Original strand, 44459540 - 44459725
Alignment:
Q  63 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 162  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44459540 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44459639  T
Q  163 tattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgct 251  Q
    ||||||| ||| ||||||||||||||   || ||| |  |||||| || |||||||||| ||| |||||||||||| ||| ||| ||||    
T  44459640 tattactttactctgcaagctctttt---gaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagatgct 44459725  T

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Target: chr8; HSP #2
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 63 - 251
Target Start/End: Original strand, 44467073 - 44467258
Alignment:
Q  63 actcatagaatccttctctgttatggggcagcaaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatact 162  Q
    ||||||| ||||||||||  |||||||||   |||| ||  | |||||||| ||||||||||  ||||| |  ||||| |||||||||||||| |||||     
T  44467073 actcatacaatccttctcaattatggggcgagaaggtaaatctgcacttgaagtttttcatatgtttgaggcctttcagtgtgtgccaaatcacgataca 44467172  T
Q  163 tattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgct 251  Q
    ||||||| ||| ||||||||||||||   || ||| |  |||||| || |||||||||| ||| |||||||||||| ||| ||| ||||    
T  44467173 tattactttactctgcaagctctttt---gaccacgacctgtagtactcatatgatccatcaagcagcttctatctgtcagaagatgct 44467258  T

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Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 44460273 - 44460430
Alignment:
Q  94 caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgagga 193  Q
    ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |||| ||||||||| ||||||       
T  44460273 caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgac-- 44460370  T
Q  194 gcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 254  Q
     ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  44460371 -cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44460430  T

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Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 44467806 - 44467963
Alignment:
Q  94 caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgagga 193  Q
    ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |||| ||||||||| ||||||       
T  44467806 caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgac-- 44467903  T
Q  194 gcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 254  Q
     ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  44467904 -cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 44467963  T

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Target: chr8; HSP #5
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 115 - 254
Target Start/End: Complemental strand, 34502382 - 34502246
Alignment:
Q  115 gtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgtagtgctgata 214  Q
    ||||||||||| ||||| | ||||||||||||||| |||| |||||| ||   || ||||||| ||||||||||   || |||||| ||||   ||||||    
T  34502382 gtttttcataaatttgaggcatttcaatgtgtgccgaatcgagatacatacacctttacactgaaagctctttt---gatcacaagatgtatcactgata 34502286  T
Q  215 tgatccaccaaacagcttctatctatcaaaagttgctgct 254  Q
    ||| ||||||| | |||||||||| ||||||| |||||||    
T  34502285 tgacccaccaagccgcttctatctgtcaaaagatgctgct 34502246  T

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Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 94 - 254
Target Start/End: Original strand, 46359143 - 46359300
Alignment:
Q  94 caaggaaaggcagcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgagga 193  Q
    ||||||||| | | ||| || ||||||||||| ||||| | ||||||||| ||||| ||||||||||| |||  | |||| ||||||||| ||||||       
T  46359143 caaggaaagaccggactcgaagtttttcataaatttgaggcatttcaatgcgtgccgaatcaagatacatatatccatacgctgcaagcttttttgac-- 46359240  T
Q  194 gcacaaggtgtagtgctgatatgatccaccaaacagcttctatctatcaaaagttgctgct 254  Q
     ||||| |||||   ||||||||||||||||| | |||||||| | ||||||| |||||||    
T  46359241 -cacaaagtgtaccactgatatgatccaccaagccgcttctatgtgtcaaaagatgctgct 46359300  T

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Target: chr6 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 106 - 254
Target Start/End: Original strand, 410919 - 411068
Alignment:
Q  106 gcacttgatgtttttcataattttgacgtatttcaatgtgtgccaaatcaagatacttattactatacactgcaagctcttttgaggagcacaaggtgta 205  Q
    |||||||| ||||||||||| ||||| |||||||||||||| |||||||||||||| ||   || |||| || |||||||||| || |  ||||| || |    
T  410919 gcacttgaagtttttcataaatttgaggtatttcaatgtgttccaaatcaagatacatacatctttacattggaagctctttttagaacaacaagttgca 411018  T
Q  206 gtgc-tgatatgatccaccaaacagcttctatctatcaaaagttgctgct 254  Q
    || | | ||||| |||| ||| | |||||||||| ||||||| |||||||    
T  411019 gtactttatatgctccagcaagcggcttctatctgtcaaaagatgctgct 411068  T

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