View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_56 (Length: 320)
Name: NF16068_low_56
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_56 |
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Alignment Details
Target: chr6 (Bit Score: 87; Significance: 1e-41; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 180 - 299
Target Start/End: Original strand, 3310783 - 3310898
Alignment:
| Q |
180 |
gagatagagagagataatagggtttggtttactatatgaacgaagtaggaggagagtttgtatgagattagatatcgaagtcttattaaatctgagggtc |
279 |
Q |
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| T |
3310783 |
gagatagagagagataatagggtttggtttactatatgaa----gtagtaggagagtttgtatgagattagatatcgaagttttattaaatctgggggcc |
3310878 |
T |
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| Q |
280 |
ggggttcatggtgatgtgta |
299 |
Q |
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| T |
3310879 |
ggggttcatggtgatgtgta |
3310898 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 9 - 135
Target Start/End: Original strand, 3310614 - 3310737
Alignment:
| Q |
9 |
gaagaatattaatcctaataatatgaaagaaagtggaatcatggttcaaaatagagaaactggaacagtcaacacctttaatttatacatnnnnnnntaa |
108 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| || | | ||| |
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| T |
3310614 |
gaagaatattaatcctaataatatgaaagaaagtgaaatcatggttcaaaatagagaaactggaacagtcaacaccttta---tacataaaaaaaaataa |
3310710 |
T |
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| Q |
109 |
taataaaaacctagaatcttttgtaac |
135 |
Q |
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||||||||||||||||||||||||||| |
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| T |
3310711 |
taataaaaacctagaatcttttgtaac |
3310737 |
T |
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