View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_low_57 (Length: 319)

Name: NF16068_low_57
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_low_57
NF16068_low_57
[»] chr4 (10 HSPs)
chr4 (1-225)||(35106989-35107214)
chr4 (1-190)||(35072682-35072871)
chr4 (1-190)||(35097811-35098000)
chr4 (1-190)||(35098100-35098289)
chr4 (1-189)||(36940478-36940666)
chr4 (1-137)||(36296508-36296644)
chr4 (1-149)||(36961358-36961507)
chr4 (76-191)||(36935858-36935974)
chr4 (224-300)||(35107235-35107316)
chr4 (65-113)||(36953720-36953768)
[»] chr6 (2 HSPs)
chr6 (1-192)||(24040736-24040927)
chr6 (1-190)||(24014181-24014370)
[»] chr5 (1 HSPs)
chr5 (55-149)||(34919141-34919235)


Alignment Details
Target: chr4 (Bit Score: 206; Significance: 1e-112; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 206; E-Value: 1e-112
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 35106989 - 35107214
Alignment:
Q  1 aaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35106989 aaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtga 35107088  T
Q  101 aagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt-aactcagaa 199  Q
    ||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||    
T  35107089 aagctgctatggagaatggtgttctcgctgtcactgtccctaaggaagagatcaagaagcctgaagtcaaagccattgaaatctctggttaaactcagaa 35107188  T
Q  200 caagctttgttactcgtcttttgttt 225  Q
    ||||||||||||||||||||||||||    
T  35107189 caagctttgttactcgtcttttgttt 35107214  T

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Target: chr4; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 35072871 - 35072682
Alignment:
Q  1 aaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtga 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  35072871 aaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagataaccagagaatgcgaaaatggatcaagtga 35072772  T
Q  101 aagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt 190  Q
    ||||||||||||||||||||||||||||||| ||||| || || |||||  | ||||| |||||  | ||  |||| |||||||||||||    
T  35072771 aagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctctggtt 35072682  T

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Target: chr4; HSP #3
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 35097811 - 35098000
Alignment:
Q  1 aaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtga 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||||    
T  35097811 aaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggaccaagtga 35097910  T
Q  101 aagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt 190  Q
    ||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||  | ||  ||||||||||||||||||    
T  35097911 aagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggtt 35098000  T

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Target: chr4; HSP #4
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 1 - 190
Target Start/End: Original strand, 35098100 - 35098289
Alignment:
Q  1 aaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtga 100  Q
    |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| || ||||||||||||||||| |||||||    
T  35098100 aaagaagataagaacgatcaatggcatcgtgtggagcgtagcagtgggaaattcatgaggaggttcagattgcctgagaatgcgaaaatggaccaagtga 35098199  T
Q  101 aagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt 190  Q
    ||||||||||||||||||||||||||||||| ||||| || || ||||||||||||||||||||  | ||  ||||||||||||||||||    
T  35098200 aagctgcaatggagaatggtgttctcactgttactgttccaaaagaagagatcaagaagcctgatgttaagtccattgaaatctctggtt 35098289  T

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Target: chr4; HSP #5
Raw Score: 101; E-Value: 5e-50
Query Start/End: Original strand, 1 - 189
Target Start/End: Complemental strand, 36940666 - 36940478
Alignment:
Q  1 aaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtga 100  Q
    |||||||||||||| |||||||||||||  ||||||||||||||||| || ||||||||||| || ||||| || |||||||| |||||||||||| |||    
T  36940666 aaagaagataagaacgatcaatggcatcccgtggagcgtagcagtgggaagttcatgaggagattaagattgcctgagaatgctaaaatggatcaaatga 36940567  T
Q  101 aagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggt 189  Q
    |||||||||||||||||||  |||||||||||||||| |||||  ||||||||||||| | |||| | ||| ||||||| |||||||||    
T  36940566 aagctgcaatggagaatggcattctcactgtcactgtgcctaaaaaagagatcaagaatcatgaagttaaaaccattgatatctctggt 36940478  T

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Target: chr4; HSP #6
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 1 - 137
Target Start/End: Complemental strand, 36296644 - 36296508
Alignment:
Q  1 aaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtga 100  Q
    |||||||| |||||  | ||||||||||| |||||||||||||||||||| || ||||||||||| ||||| || || ||||| || |||||||| ||||    
T  36296644 aaagaagacaagaacaaccaatggcatcgcgtggagcgtagcagtggaaagtttatgaggaggttcagattgcccgaaaatgccaagatggatcaggtga 36296545  T
Q  101 aagctgcaatggagaatggtgttctcactgtcactgt 137  Q
    ||||||||||||||||||||||||||||||| |||||    
T  36296544 aagctgcaatggagaatggtgttctcactgtaactgt 36296508  T

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Target: chr4; HSP #7
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 1 - 149
Target Start/End: Original strand, 36961358 - 36961507
Alignment:
Q  1 aaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtga 100  Q
    ||||||||||||||  || |||||||| | ||||||| ||||||||| ||||||||||||| |||||||||  |||||||||| || |||||||| ||||    
T  36961358 aaagaagataagaacaatgaatggcattgcgtggagcttagcagtgggaaattcatgaggaagtttagattggcagagaatgctaagatggatcaggtga 36961457  T
Q  101 aagc-tgcaatggagaatggtgttctcactgtcactgtccctaaggaaga 149  Q
    | ||   ||  ||||||||||||||||||||| ||| | |||||||||||    
T  36961458 atgcaaacatgggagaatggtgttctcactgtaactattcctaaggaaga 36961507  T

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Target: chr4; HSP #8
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 76 - 191
Target Start/End: Complemental strand, 36935974 - 36935858
Alignment:
Q  76 gagaatgcgaaaatggatcaagtgaaagctgcaa-tggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagcc 174  Q
    |||||||| ||||||||||||||||||||||||| |||||||||||||||||||||| || || ||  | |||||| | |||||||||||| | ||  ||    
T  36935974 gagaatgctaaaatggatcaagtgaaagctgcaattggagaatggtgttctcactgttaccgtgccacaagaagaggttaagaagcctgaagtgaagacc 36935875  T
Q  175 attgaaatctctggtta 191  Q
    ||||| |||||||||||    
T  36935874 attgatatctctggtta 36935858  T

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Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 224 - 300
Target Start/End: Original strand, 35107235 - 35107316
Alignment:
Q  224 ttgttttgtaatgcttactttgtttgtgatgtctgtgcaagaaat-----ctatgatgatgtaatatgtgagatgttaatcc 300  Q
    ||||||||||||||||||||||||||||||||||||||||| |||      | | || ||||||||||||||||||||||||    
T  35107235 ttgttttgtaatgcttactttgtttgtgatgtctgtgcaaggaatacttggtgttataatgtaatatgtgagatgttaatcc 35107316  T

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Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 65 - 113
Target Start/End: Complemental strand, 36953768 - 36953720
Alignment:
Q  65 ttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatgga 113  Q
    ||||||| || || ||||| |||| ||||||||||||||||||||||||    
T  36953768 ttagattgcctgacaatgctaaaacggatcaagtgaaagctgcaatgga 36953720  T

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Target: chr6 (Bit Score: 152; Significance: 2e-80; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 152; E-Value: 2e-80
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 24040927 - 24040736
Alignment:
Q  1 aaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24040927 aaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtga 24040828  T
Q  101 aagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggttaa 192  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||  | ||||||||| || | ||  ||||||| ||||||||||||    
T  24040827 aagctgcaatggagaatggtattctcactgtcactgtccctaaggaagaagttaagaagcctcaagtgaagaccattgatatctctggttaa 24040736  T

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Target: chr6; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 1 - 190
Target Start/End: Complemental strand, 24014370 - 24014181
Alignment:
Q  1 aaagaagataagaatgatcaatggcatcgtgtggagcgtagcagtggaaaattcatgaggaggtttagattaccagagaatgcgaaaatggatcaagtga 100  Q
    |||||||||||||| ||||||||||||||||||||||| ||||| ||||| ||||||||||| || || || || || ||||||||||||||||||||||    
T  24014370 aaagaagataagaacgatcaatggcatcgtgtggagcgcagcagcggaaagttcatgaggagattcaggttgcccgaaaatgcgaaaatggatcaagtga 24014271  T
Q  101 aagctgcaatggagaatggtgttctcactgtcactgtccctaaggaagagatcaagaagcctgaaatcaaagccattgaaatctctggtt 190  Q
    ||||||||||||||||||||||||||||||| ||||| || || |||||  | ||||| |||||  | ||  |||| |||||||||||||    
T  24014270 aagctgcaatggagaatggtgttctcactgttactgttccaaaagaagaagttaagaaacctgatgttaagtccatcgaaatctctggtt 24014181  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 55 - 149
Target Start/End: Original strand, 34919141 - 34919235
Alignment:
Q  55 atgaggaggtttagattaccagagaatgcgaaaatggatcaagtgaaagctgcaatggagaatggtgttctcactgtcactgtccctaaggaaga 149  Q
    |||||||||||||| || || |||||||  ||||||||||| || |||||||  ||||||||||| ||||| ||||| ||||| |||||||||||    
T  34919141 atgaggaggtttaggttgcctgagaatgttaaaatggatcaggttaaagctggtatggagaatggggttcttactgttactgttcctaaggaaga 34919235  T

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