View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_58 (Length: 318)
Name: NF16068_low_58
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_58 |
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Alignment Details
Target: chr4 (Bit Score: 244; Significance: 1e-135; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 244; E-Value: 1e-135
Query Start/End: Original strand, 1 - 307
Target Start/End: Complemental strand, 5148847 - 5148543
Alignment:
| Q |
1 |
aaatattagatatcagagaaaacaattagattatcaagtatttaaattatgtaaaaaatatacattccatttggnnnnnnnnttcttgtcattttcttta |
100 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
5148847 |
aaatattagatatcagagaaaacaat--gattatcaagtatttaaattatgtaaaaaatatacatcccatttggaaaaaaaattcttgtcattttcttta |
5148750 |
T |
|
| Q |
101 |
taagaccatctttggattttcaagtgcattaaataatatttctttatcaatataccacaaaagtactaccactttctttttgactaacgctccgtaatta |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||| |||||||||||| ||||||| |||||||| |
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| T |
5148749 |
taagaccatctttggattttcaagtgcattaaataatatttctttatcaatttaccactaaagtactacctctttctttttgattaacgctgcgtaatta |
5148650 |
T |
|
| Q |
201 |
agatctttgactccggttggcacccaaagatatcatcatgggaacttaaataaactctctcttttgaaggataaacttatactcattcattttaaaataa |
300 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5148649 |
agatctttgactccagttggcacccaaagatatcatcatgggaacttaaataaactctctcttttgaaggataaacttatactcattcattttaaaataa |
5148550 |
T |
|
| Q |
301 |
tcctatg |
307 |
Q |
| |
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||||||| |
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| T |
5148549 |
tcctatg |
5148543 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 1 - 282
Target Start/End: Complemental strand, 5177599 - 5177321
Alignment:
| Q |
1 |
aaatattagatatcagagaaaacaattagattatcaagtatttaaattatgtaaaaaatatacattccatttggnnnnnnnnttcttgtcattttcttta |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| |||||||||||||||||| |
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| T |
5177599 |
aaatattagatatcaaagaaaacaattagattatcaagtatttaaattaagtaaaaaatatacatcccatttggaaaaaaaattcttgtcattttcttta |
5177500 |
T |
|
| Q |
101 |
taagaccatctttggattttcaagtgcattaaataatatttctttatcaatataccacaaaagtactaccactttctttttgactaacgctccgtaatta |
200 |
Q |
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|||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| |
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| T |
5177499 |
taagaccatctttggattttcaagtgtattaaata---tttctttatcaatataccaccaaagtactacctctttctttttgactaacgctccgtaatta |
5177403 |
T |
|
| Q |
201 |
agatctttgactccggttggcacccaaagatatcatcatgggaacttaaataaactctctcttttgaaggataaacttatac |
282 |
Q |
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|||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
5177402 |
agatctttaactccagttggcacccaaagatatcctcatgggaacttaaataaactctctcttttgaagggtaaacttatac |
5177321 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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