View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_low_61 (Length: 312)

Name: NF16068_low_61
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_low_61
NF16068_low_61
[»] chr2 (15 HSPs)
chr2 (76-142)||(10491368-10491434)
chr2 (196-282)||(10490208-10490294)
chr2 (74-134)||(10505495-10505555)
chr2 (76-134)||(7483220-7483278)
chr2 (78-134)||(10462248-10462304)
chr2 (78-134)||(10471342-10471398)
chr2 (78-134)||(10543540-10543596)
chr2 (17-73)||(7476580-7476637)
chr2 (17-73)||(10492762-10492819)
chr2 (224-302)||(10464662-10464740)
chr2 (82-134)||(10516637-10516689)
chr2 (78-134)||(27966406-27966462)
chr2 (78-134)||(28106214-28106270)
chr2 (247-302)||(10508867-10508922)
chr2 (76-134)||(10486928-10486986)
[»] chr5 (1 HSPs)
chr5 (78-127)||(33601068-33601117)


Alignment Details
Target: chr2 (Bit Score: 63; Significance: 2e-27; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 76 - 142
Target Start/End: Complemental strand, 10491434 - 10491368
Alignment:
Q  76 tgcaactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaatgaggaaaa 142  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  10491434 tgcaactacttttggatggtgtgcttaactatttgccgtgtccaactgaagctattaatgaggaaaa 10491368  T

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Target: chr2; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 196 - 282
Target Start/End: Complemental strand, 10490294 - 10490208
Alignment:
Q  196 gttccgttcttattcttgataatgatgttgttgatgggttgcagagccaccccattgctgatgataagcaaaaggtaacatatcaaa 282  Q
    |||| |||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||| |||||| ||||| ||||||    
T  10490294 gttcggttcttattcttgatagtgatgctgttgatgggttgcagagccaccccactgctgatgataatcaaaagttaacaaatcaaa 10490208  T

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Target: chr2; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 74 - 134
Target Start/End: Complemental strand, 10505555 - 10505495
Alignment:
Q  74 gttgcaactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    |||||||||||||||||||||||||||||| |||||| |||||||||||||||||| ||||    
T  10505555 gttgcaactacttttggatggtgtgcttaattatttgccgtgtccaactgaagctagtaat 10505495  T

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Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 76 - 134
Target Start/End: Original strand, 7483220 - 7483278
Alignment:
Q  76 tgcaactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    ||||||||||||| | ||||||||||||||||||| |||||||||||||||||| ||||    
T  7483220 tgcaactactttttgctggtgtgcttaactatttgccgtgtccaactgaagctagtaat 7483278  T

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Target: chr2; HSP #5
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 10462304 - 10462248
Alignment:
Q  78 caactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    |||||| ||||||||||||| ||||| |||||| |||||||||||||||||||||||    
T  10462304 caactaattttggatggtgtacttaattatttgccgtgtccaactgaagctattaat 10462248  T

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Target: chr2; HSP #6
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 10471398 - 10471342
Alignment:
Q  78 caactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||||    
T  10471398 caactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaat 10471342  T

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Target: chr2; HSP #7
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 10543596 - 10543540
Alignment:
Q  78 caactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    |||||||||||||||||||| ||||| |||||| |||||||||||||||||| ||||    
T  10543596 caactacttttggatggtgtacttaattatttgccgtgtccaactgaagctagtaat 10543540  T

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Target: chr2; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Original strand, 7476580 - 7476637
Alignment:
Q  17 caaccatagcacagaaatttgtgccggttttcat-ggtagcgcattcaagtataaggt 73  Q
    |||| ||||||||||||||||| ||||||||||| ||||| |||||||||||||||||    
T  7476580 caactatagcacagaaatttgtaccggttttcatgggtagtgcattcaagtataaggt 7476637  T

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Target: chr2; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 17 - 73
Target Start/End: Complemental strand, 10492819 - 10492762
Alignment:
Q  17 caaccatagcacagaaatttgtgccggttttcat-ggtagcgcattcaagtataaggt 73  Q
    ||||||||||||| |||||||| ||||||||||| ||||| |||||||||||||||||    
T  10492819 caaccatagcacataaatttgtaccggttttcatgggtagtgcattcaagtataaggt 10492762  T

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Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 224 - 302
Target Start/End: Complemental strand, 10464740 - 10464662
Alignment:
Q  224 tgttgatgggttgcagagccaccccattgctgatgataagcaaaaggtaacatatcaaaatccaatacctgtattcatc 302  Q
    |||||||||| ||||||||||| |||||| ||   ||||||||| |||||||||||||  ||||| || ||||||||||    
T  10464740 tgttgatggggtgcagagccactccattgttgtcaataagcaaatggtaacatatcaacttccaagacttgtattcatc 10464662  T

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Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 10516689 - 10516637
Alignment:
Q  82 tacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    |||||||||||||| | ||||| |||||| |||||||||||||||||| ||||    
T  10516689 tacttttggatggtctacttaattatttgccgtgtccaactgaagctagtaat 10516637  T

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Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Complemental strand, 27966462 - 27966406
Alignment:
Q  78 caactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    ||||||||||||||||||||  |||| |||||| ||||||||| |||||||| ||||    
T  27966462 caactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaat 27966406  T

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Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 78 - 134
Target Start/End: Original strand, 28106214 - 28106270
Alignment:
Q  78 caactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    ||||||||||||||||||||  |||| |||||| ||||||||| |||||||| ||||    
T  28106214 caactacttttggatggtgtaattaattatttgccgtgtccaattgaagctagtaat 28106270  T

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Target: chr2; HSP #14
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 247 - 302
Target Start/End: Complemental strand, 10508922 - 10508867
Alignment:
Q  247 ccattgctgatgataagcaaaaggtaacatatcaaaatccaatacctgtattcatc 302  Q
    ||||||||| ||||||||||| |||||||||||||  ||||| || ||||||||||    
T  10508922 ccattgctgttgataagcaaatggtaacatatcaacttccaagacttgtattcatc 10508867  T

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Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 76 - 134
Target Start/End: Complemental strand, 10486986 - 10486928
Alignment:
Q  76 tgcaactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagctattaat 134  Q
    |||||||||||||||||||| ||| ||| ||||  |||||||||| |||||||| ||||    
T  10486986 tgcaactacttttggatggtatgcgtaagtattgttcgtgtccaattgaagctagtaat 10486928  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 78 - 127
Target Start/End: Complemental strand, 33601117 - 33601068
Alignment:
Q  78 caactacttttggatggtgtgcttaactatttgtcgtgtccaactgaagc 127  Q
    |||| |||||||||||||||||||||  ||||| ||||||||||||||||    
T  33601117 caaccacttttggatggtgtgcttaataatttgccgtgtccaactgaagc 33601068  T

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