View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_low_62 (Length: 311)

Name: NF16068_low_62
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_low_62
NF16068_low_62
[»] chr7 (9 HSPs)
chr7 (37-291)||(35742939-35743193)
chr7 (176-293)||(35749299-35749425)
chr7 (1-36)||(725670-725705)
chr7 (1-36)||(5374620-5374655)
chr7 (1-36)||(44459440-44459475)
chr7 (1-37)||(4859570-4859606)
chr7 (1-34)||(20119874-20119907)
chr7 (3-36)||(48607762-48607795)
chr7 (1-37)||(9663735-9663771)
[»] scaffold0227 (1 HSPs)
scaffold0227 (239-293)||(3679-3733)
[»] chr6 (6 HSPs)
chr6 (1-37)||(11837824-11837860)
chr6 (1-36)||(14103784-14103819)
chr6 (1-39)||(24082988-24083026)
chr6 (1-36)||(23580078-23580113)
chr6 (6-36)||(12142888-12142918)
chr6 (1-37)||(17551054-17551090)
[»] chr5 (10 HSPs)
chr5 (1-37)||(42612429-42612465)
chr5 (1-36)||(37270239-37270274)
chr5 (1-37)||(39588252-39588288)
chr5 (1-36)||(745774-745809)
chr5 (246-285)||(16865344-16865383)
chr5 (1-36)||(27020254-27020289)
chr5 (1-36)||(34401510-34401545)
chr5 (195-225)||(16865281-16865311)
chr5 (1-38)||(12499211-12499248)
chr5 (4-36)||(31552330-31552362)
[»] chr1 (6 HSPs)
chr1 (1-45)||(33704394-33704438)
chr1 (1-36)||(21096641-21096676)
chr1 (1-38)||(30838885-30838922)
chr1 (1-37)||(51086565-51086601)
chr1 (1-35)||(35954226-35954260)
chr1 (1-37)||(25655664-25655700)
[»] chr4 (15 HSPs)
chr4 (1-36)||(20354270-20354305)
chr4 (1-36)||(23419502-23419537)
chr4 (3-37)||(16664481-16664515)
chr4 (1-38)||(41041638-41041675)
chr4 (1-37)||(17360960-17360996)
chr4 (1-36)||(4652786-4652821)
chr4 (1-36)||(7487061-7487096)
chr4 (1-36)||(17520125-17520160)
chr4 (1-36)||(31292796-31292831)
chr4 (1-36)||(50496325-50496360)
chr4 (1-36)||(54919226-54919261)
chr4 (1-35)||(34072854-34072888)
chr4 (3-36)||(20787238-20787271)
chr4 (1-37)||(13534759-13534795)
chr4 (4-36)||(35824323-35824355)
[»] chr3 (13 HSPs)
chr3 (1-36)||(37220284-37220319)
chr3 (1-34)||(44843376-44843409)
chr3 (4-41)||(51723003-51723040)
chr3 (1-37)||(4233226-4233262)
chr3 (5-37)||(50548676-50548708)
chr3 (1-36)||(6177389-6177424)
chr3 (1-36)||(13213286-13213321)
chr3 (1-36)||(22604711-22604746)
chr3 (1-36)||(30043669-30043704)
chr3 (1-36)||(37785253-37785288)
chr3 (3-36)||(8852330-8852363)
chr3 (1-34)||(45169817-45169850)
chr3 (1-38)||(53845124-53845161)
[»] chr8 (10 HSPs)
chr8 (239-293)||(40011229-40011283)
chr8 (1-37)||(27911880-27911916)
chr8 (1-37)||(27958299-27958335)
chr8 (14-45)||(3705296-3705327)
chr8 (1-36)||(3846499-3846534)
chr8 (1-36)||(6093182-6093217)
chr8 (1-36)||(15883601-15883636)
chr8 (1-36)||(25583790-25583825)
chr8 (246-292)||(10862282-10862328)
chr8 (1-34)||(17853460-17853493)
[»] chr2 (6 HSPs)
chr2 (3-36)||(37726098-37726131)
chr2 (5-37)||(77781-77813)
chr2 (1-36)||(2292520-2292555)
chr2 (1-36)||(15152371-15152406)
chr2 (3-34)||(28391982-28392013)
chr2 (1-37)||(38282441-38282477)
[»] scaffold0115 (1 HSPs)
scaffold0115 (1-34)||(20718-20751)


Alignment Details
Target: chr7 (Bit Score: 239; Significance: 1e-132; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 37 - 291
Target Start/End: Complemental strand, 35743193 - 35742939
Alignment:
Q  37 attttattagggcatcaaagttagattttgtattcatgattgatcactatgatttgttattattagggcattcaaagttagattttgcattgactcttct 136  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35743193 attttattagggcatcaaagttagattttgtattcatgattgatcactatgatttgttattattagggcattcaaagttagattttgcattgactcttct 35743094  T
Q  137 gatatttcttgtgttgcatcggtattttgaagtcatatcgtaatatttacacttctgcttgcttgaatttgtagttcacttatgactctttccgatcaag 236  Q
    |||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35743093 gatatttcttgtgttgcatcagtattttgaagtcagatcgtaatatttacacttctgcttgcttgaatttgtagttcacttatgactctttccgatcaag 35742994  T
Q  237 aggatcaaattgatcgaatcagtgacttaccatgcaatgtcattgatggtatcct 291  Q
    |||||||||||||||||||||||||||||||||||||||||||||| || |||||    
T  35742993 aggatcaaattgatcgaatcagtgacttaccatgcaatgtcattgacggcatcct 35742939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 176 - 293
Target Start/End: Complemental strand, 35749425 - 35749299
Alignment:
Q  176 gtaatatttacacttctgcttgcttgaatttgtagttcacttatgactctttccgatcaagagg----------atcaaattgatcgaatcagtgactta 265  Q
    ||||||||||||||| |||||||||||||||||||||  ||||||||||| ||  | ||||| |          |||| |||||||||||||||||||||    
T  35749425 gtaatatttacacttgtgcttgcttgaatttgtagttaccttatgactctgtctaa-caagaaggccaatcatgatcacattgatcgaatcagtgactta 35749327  T
Q  266 ccatgcaatgtcattgatggtatcctag 293  Q
    ||||| ||||| ||||||| ||||||||    
T  35749326 ccatgtaatgttattgatgatatcctag 35749299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 725670 - 725705
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  725670 accctctaaacaagagagggtaacgtaggcctcacc 725705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 5374620 - 5374655
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  5374620 accctctaaacaagagagggtaacgtaggcctcacc 5374655  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 44459440 - 44459475
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  44459440 accctctaaacaagagagggtaacgtaggcctcacc 44459475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 4859606 - 4859570
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacca 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  4859606 accctctaaacaagagagggtaacataggcctcacca 4859570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20119907 - 20119874
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctca 34  Q
    |||||||||||||||||||||||||||| |||||    
T  20119907 accctctaaacaagagagggtaacgtagacctca 20119874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 48607762 - 48607795
Alignment:
Q  3 cctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||| ||||||||||||||||||||||    
T  48607762 cctctaaacaaaagagggtaacgtaggcctcacc 48607795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 9663735 - 9663771
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacca 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  9663735 accctctaaacaagagagggtaatataggcctcacca 9663771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0227 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0227
Description:

Target: scaffold0227; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 3733 - 3679
Alignment:
Q  239 gatcaaattgatcgaatcagtgacttaccatgcaatgtcattgatggtatcctag 293  Q
    ||||| |||||||||||||||||||||||||| |||||||||||||| |||||||    
T  3733 gatcacattgatcgaatcagtgacttaccatgtaatgtcattgatggcatcctag 3679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 11837824 - 11837860
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacca 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  11837824 accctctaaacaagagagggtaacgtaggcctcacca 11837860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 14103819 - 14103784
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  14103819 accctctaaacaagagagggtaacgtaggcctcacc 14103784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 24083026 - 24082988
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcaccatt 39  Q
    |||||||||| ||||||||||||||||||||||||||||    
T  24083026 accctctaaataagagagggtaacgtaggcctcaccatt 24082988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 23580113 - 23580078
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  23580113 accctctaaacaagagagggtaaggtaggcctcacc 23580078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 6 - 36
Target Start/End: Original strand, 12142888 - 12142918
Alignment:
Q  6 ctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||||||||||||||||    
T  12142888 ctaaacaagagagggtaacgtaggcctcacc 12142918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 17551054 - 17551090
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacca 37  Q
    ||||| |||||||||||||||||||||||| ||||||    
T  17551054 accctttaaacaagagagggtaacgtaggcttcacca 17551090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000007; HSPs: 10)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 42612429 - 42612465
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacca 37  Q
    |||||||||||||||||||||||||||||||||||||    
T  42612429 accctctaaacaagagagggtaacgtaggcctcacca 42612465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 37270274 - 37270239
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  37270274 accctctaaacaagagagggtaacgtaggcctcacc 37270239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 39588288 - 39588252
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacca 37  Q
    ||||||||||||||||||||||||||| |||||||||    
T  39588288 accctctaaacaagagagggtaacgtaagcctcacca 39588252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 745774 - 745809
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  745774 accctctaaacaagagagggtaacgtaggcttcacc 745809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 246 - 285
Target Start/End: Original strand, 16865344 - 16865383
Alignment:
Q  246 ttgatcgaatcagtgacttaccatgcaatgtcattgatgg 285  Q
    ||||||||||||||||||||||| | ||||||||||||||    
T  16865344 ttgatcgaatcagtgacttaccaagtaatgtcattgatgg 16865383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 27020254 - 27020289
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  27020254 accctctaaacaagagagggtaatgtaggcctcacc 27020289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 34401545 - 34401510
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  34401545 accctctaaacaagagagggtaacgtagacctcacc 34401510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 195 - 225
Target Start/End: Original strand, 16865281 - 16865311
Alignment:
Q  195 ttgcttgaatttgtagttcacttatgactct 225  Q
    |||||||||||||||||||||||||||||||    
T  16865281 ttgcttgaatttgtagttcacttatgactct 16865311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 12499248 - 12499211
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcaccat 38  Q
    ||||||||||||| |||||||||| |||||||||||||    
T  12499248 accctctaaacaaaagagggtaacataggcctcaccat 12499211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Original strand, 31552330 - 31552362
Alignment:
Q  4 ctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||| |||||||||||||||||||||||    
T  31552330 ctctaaacaggagagggtaacgtaggcctcacc 31552362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 37; Significance: 0.000000000007; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 33704438 - 33704394
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcaccattttatta 45  Q
    |||||||||||||||||||||||||||||| ||||||| ||||||    
T  33704438 accctctaaacaagagagggtaacgtaggcttcaccatattatta 33704394  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 21096676 - 21096641
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  21096676 accctctaaacaagagagggtaacgtaggcctcacc 21096641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 30838885 - 30838922
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcaccat 38  Q
    |||||||||| |||||||||||||||||||||||||||    
T  30838885 accctctaaataagagagggtaacgtaggcctcaccat 30838922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 51086601 - 51086565
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacca 37  Q
    |||||||||| ||||||||||||||||||||||||||    
T  51086601 accctctaaataagagagggtaacgtaggcctcacca 51086565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 35954260 - 35954226
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcac 35  Q
    |||||||||||||||||||||||| ||||||||||    
T  35954260 accctctaaacaagagagggtaacataggcctcac 35954226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 25655700 - 25655664
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacca 37  Q
    ||||||||||||||| |||||||||||| ||||||||    
T  25655700 accctctaaacaagaaagggtaacgtagacctcacca 25655664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 20354270 - 20354305
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  20354270 accctctaaacaagagagggtaacgtaggcctcacc 20354305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 23419502 - 23419537
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  23419502 accctctaaacaagagagggtaacgtaggcctcacc 23419537  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 3 - 37
Target Start/End: Complemental strand, 16664515 - 16664481
Alignment:
Q  3 cctctaaacaagagagggtaacgtaggcctcacca 37  Q
    |||||||||||||||||||||||||||||||||||    
T  16664515 cctctaaacaagagagggtaacgtaggcctcacca 16664481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 41041638 - 41041675
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcaccat 38  Q
    ||||||||||||||||||||||| ||||||||||||||    
T  41041638 accctctaaacaagagagggtaatgtaggcctcaccat 41041675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 17360996 - 17360960
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacca 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  17360996 accctctaaacaagagagggtaacgtagacctcacca 17360960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 4652821 - 4652786
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  4652821 accctctaaacaagagagggtaatgtaggcctcacc 4652786  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 7487096 - 7487061
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  7487096 accctctaaacaagagagggtaacataggcctcacc 7487061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 17520125 - 17520160
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  17520125 accctctaaacaagagagggtaacgtagacctcacc 17520160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 31292796 - 31292831
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  31292796 accctctaaacaagagagggtaacgtaggtctcacc 31292831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 50496325 - 50496360
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||| |||||||||||||||||||||||||||||||    
T  50496325 accccctaaacaagagagggtaacgtaggcctcacc 50496360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 54919261 - 54919226
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  54919261 accctctaaacaagagagggtaacgtaggcttcacc 54919226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 34072888 - 34072854
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcac 35  Q
    |||||||||||||||||||||||||||| ||||||    
T  34072888 accctctaaacaagagagggtaacgtagacctcac 34072854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 20787238 - 20787271
Alignment:
Q  3 cctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||||||||||| |||||||    
T  20787238 cctctaaacaagagagggtaacgtagtcctcacc 20787271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 13534759 - 13534795
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacca 37  Q
    |||||||||||||||||||||||  ||||||||||||    
T  13534759 accctctaaacaagagagggtaatataggcctcacca 13534795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 4 - 36
Target Start/End: Complemental strand, 35824355 - 35824323
Alignment:
Q  4 ctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||||||||| ||||||||    
T  35824355 ctctaaacaagagagggtaacgtatgcctcacc 35824323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 36; Significance: 0.00000000003; HSPs: 13)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 37220284 - 37220319
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||||||||||||||||    
T  37220284 accctctaaacaagagagggtaacgtaggcctcacc 37220319  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 44843376 - 44843409
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctca 34  Q
    ||||||||||||||||||||||||||||||||||    
T  44843376 accctctaaacaagagagggtaacgtaggcctca 44843409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 4 - 41
Target Start/End: Original strand, 51723003 - 51723040
Alignment:
Q  4 ctctaaacaagagagggtaacgtaggcctcaccatttt 41  Q
    |||||||||||| |||||||||||||||||||||||||    
T  51723003 ctctaaacaagaaagggtaacgtaggcctcaccatttt 51723040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 4233226 - 4233262
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacca 37  Q
    |||||||||||||||||||||||| ||||||||||||    
T  4233226 accctctaaacaagagagggtaacttaggcctcacca 4233262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 50548676 - 50548708
Alignment:
Q  5 tctaaacaagagagggtaacgtaggcctcacca 37  Q
    |||||||||||||||||||||||||||||||||    
T  50548676 tctaaacaagagagggtaacgtaggcctcacca 50548708  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 6177389 - 6177424
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||| |||||||||||||||||    
T  6177389 accctctaaacaagagagcgtaacgtaggcctcacc 6177424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 13213321 - 13213286
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  13213321 accctctaaacaagagagggtaacataggcctcacc 13213286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 22604746 - 22604711
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||||||||||||||| |||||    
T  22604746 accctctaaacaagagagggtaacgtaggcttcacc 22604711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 30043669 - 30043704
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||| ||||||||||||    
T  30043669 accctctaaacaagagagggtaatgtaggcctcacc 30043704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 37785288 - 37785253
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||||||||||||| |||||||    
T  37785288 accctctaaacaagagagggtaacgtagtcctcacc 37785253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 8852330 - 8852363
Alignment:
Q  3 cctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||||||||||| |||||||    
T  8852330 cctctaaacaagagagggtaacgtagtcctcacc 8852363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 45169850 - 45169817
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctca 34  Q
    |||||||||| |||||||||||||||||||||||    
T  45169850 accctctaaaaaagagagggtaacgtaggcctca 45169817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 53845161 - 53845124
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcaccat 38  Q
    |||||||||| |||||||||||||||| ||||||||||    
T  53845161 accctctaaataagagagggtaacgtaagcctcaccat 53845124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 239 - 293
Target Start/End: Complemental strand, 40011283 - 40011229
Alignment:
Q  239 gatcaaattgatcgaatcagtgacttaccatgcaatgtcattgatggtatcctag 293  Q
    ||||| |||||||||||||||||||||||| | |||||||| ||||| |||||||    
T  40011283 gatcacattgatcgaatcagtgacttaccaagtaatgtcatcgatggcatcctag 40011229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27911916 - 27911880
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacca 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  27911916 accctctaaacaagagagggtaacgtagtcctcacca 27911880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 27958335 - 27958299
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacca 37  Q
    |||||||||||||||||||||||||||| ||||||||    
T  27958335 accctctaaacaagagagggtaacgtagtcctcacca 27958299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 14 - 45
Target Start/End: Original strand, 3705296 - 3705327
Alignment:
Q  14 gagagggtaacgtaggcctcaccattttatta 45  Q
    ||||||||||||||||||||||||||||||||    
T  3705296 gagagggtaacgtaggcctcaccattttatta 3705327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 3846534 - 3846499
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||| |||||||||||||||||    
T  3846534 accctctaaacaagagagtgtaacgtaggcctcacc 3846499  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 6093217 - 6093182
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||||||||| ||||||    
T  6093217 accctctaaacaagagagggtaacgtaggtctcacc 6093182  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 15883601 - 15883636
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||| |||||||||||||||||    
T  15883601 accctctaaacaagagagagtaacgtaggcctcacc 15883636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 25583790 - 25583825
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  25583790 accctctaaacaagagagggtaacataggcctcacc 25583825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 292
Target Start/End: Original strand, 10862282 - 10862328
Alignment:
Q  246 ttgatcgaatcagtgacttaccatgcaatgtcattgatggtatccta 292  Q
    ||||| |||| |||||||||||||| |||||||||||||| ||||||    
T  10862282 ttgattgaattagtgacttaccatgtaatgtcattgatggcatccta 10862328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Original strand, 17853460 - 17853493
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctca 34  Q
    |||||||||||||||||||||||||||| |||||    
T  17853460 accctctaaacaagagagggtaacgtagacctca 17853493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 3 - 36
Target Start/End: Original strand, 37726098 - 37726131
Alignment:
Q  3 cctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||||||||||||||    
T  37726098 cctctaaacaagagagggtaacgtaggcctcacc 37726131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 37
Target Start/End: Original strand, 77781 - 77813
Alignment:
Q  5 tctaaacaagagagggtaacgtaggcctcacca 37  Q
    |||||||||||||||||||||||||||||||||    
T  77781 tctaaacaagagagggtaacgtaggcctcacca 77813  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 2292520 - 2292555
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||| ||||||||||||||||    
T  2292520 accctctaaacaagagaggataacgtaggcctcacc 2292555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 15152406 - 15152371
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacc 36  Q
    ||||||||||||||||||||||||||| ||||||||    
T  15152406 accctctaaacaagagagggtaacgtaagcctcacc 15152371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 3 - 34
Target Start/End: Original strand, 28391982 - 28392013
Alignment:
Q  3 cctctaaacaagagagggtaacgtaggcctca 34  Q
    ||||||||||||||||||||||||||||||||    
T  28391982 cctctaaacaagagagggtaacgtaggcctca 28392013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 38282441 - 38282477
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctcacca 37  Q
    ||||||||||||||||||||||||||| | |||||||    
T  38282441 accctctaaacaagagagggtaacgtaagtctcacca 38282477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0115 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: scaffold0115
Description:

Target: scaffold0115; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 34
Target Start/End: Complemental strand, 20751 - 20718
Alignment:
Q  1 accctctaaacaagagagggtaacgtaggcctca 34  Q
    ||||||||||||||| ||||||||||||||||||    
T  20751 accctctaaacaagatagggtaacgtaggcctca 20718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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