View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16068_low_63 (Length: 310)
Name: NF16068_low_63
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_63 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 17 - 294
Target Start/End: Complemental strand, 1429108 - 1428831
Alignment:
| Q |
17 |
aatatctaatataaaactggcgtgattttaagaacttaataattggggcttttgtgttgtcctgatttcgnnnnnnnntgtgaat-gcaatcgcacatcc |
115 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||| ||||||| |||||||||||||| |
|
|
| T |
1429108 |
aatatctaatataaaactggcgtggttttaagaacttaataattggagcttttgtgttgtcctgatttcgaaaaaaaatgtgaattgcaatcgcacatcc |
1429009 |
T |
|
| Q |
116 |
aaacagatgcagggactcctaatacttccgaaagatttttcaaacaaatagactgtggtaatagagatcatgtcaannnnnnnnnaataagtgatataat |
215 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||| |
|
|
| T |
1429008 |
aaacagatgcagggactcctaatacttccgaaagatttttcaaacaaatagactttggtaatagagatcatgtcaatttttttttaataagtgatataat |
1428909 |
T |
|
| Q |
216 |
nnnnnnntctttaaaggactccgattacacttaatccaatttgaaaagttgacattgtctcaacatctaactgcaaagt |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1428908 |
-aaaaaatctttaaaggactccgattacacttaatccaatttgaaaagttgacattgtctcaacatctaactgcaaagt |
1428831 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University