View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_66 (Length: 293)
Name: NF16068_low_66
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_66 |
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Alignment Details
Target: chr2 (Bit Score: 257; Significance: 1e-143; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 6 - 278
Target Start/End: Complemental strand, 9082796 - 9082524
Alignment:
| Q |
6 |
agtagcaaaggctttgaatgatatgttaggaccaagacataagaatgccccgaaagtagacctcgtgctgtctatatcagaggtccaatcaacatcacaa |
105 |
Q |
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|||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||| |
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| T |
9082796 |
agtagctaaggctttgaatgatatgttaggaccaagacataagaatgccccgaaaggagacctcgtgctgtctatatcagacgtccaatcaacatcacaa |
9082697 |
T |
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| Q |
106 |
taggcctacaaacttgggggagacaaagggtaagcatcctgaagaactaaaccatgatccagagcctttcctttgagatatcacaaaattcactttactg |
205 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9082696 |
taggcctacaaacttgggggagacaaagggtaagcatcctgcagaactaaaccatgatccagagcctttcctttgagatatcacaaaattcactttactg |
9082597 |
T |
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| Q |
206 |
caatagagtaactctacaggggttgagccacaaaccggcagcatttccaacttaggattcctaggaaggaggt |
278 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9082596 |
caatagagtaactctacaggggttgagccacaaaccggcagcatttccaacttaggattcctaggaaggaggt |
9082524 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 6 - 249
Target Start/End: Complemental strand, 9077518 - 9077273
Alignment:
| Q |
6 |
agtagcaaaggctttgaatgatatgttaggaccaagacataagaatgccccgaaagtagacctcgtgctgtctatatcagaggtccaatcaacatcacaa |
105 |
Q |
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|||||| |||||| ||||| ||| |||||||||||| ||||| ||||||| ||||| ||||||| || | |||| |||||||||| |||||||||||||| |
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| T |
9077518 |
agtagctaaggctatgaatcataagttaggaccaaggcataacaatgccctgaaagcagacctcatgttatctacatcagaggtcaaatcaacatcacaa |
9077419 |
T |
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| Q |
106 |
taggcctacaaacttgggggagacaa-agggtaagcatcctgaagaactaaaccatgatccagagcctttcctttga-gatatcacaaaattcactttac |
203 |
Q |
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| T |
9077418 |
taggcctgcaaacatgggggagaaaatagggtaaacatcctgcagaactaaaccaagatccagagtctttccttttaagacatcttgaaattcactatac |
9077319 |
T |
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| Q |
204 |
tgcaatagagtaactctacaggggttgagccacaaaccggcagcat |
249 |
Q |
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| T |
9077318 |
ggcaatataataattctgcaggggttgagctacaaaccggcagcat |
9077273 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 30 - 239
Target Start/End: Original strand, 10542763 - 10542971
Alignment:
| Q |
30 |
gttaggaccaagacataagaatgccccgaaagtagacctcgtgctgtctatatcagaggtccaatcaacatcacaataggcctacaaacttgggggagac |
129 |
Q |
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|||||||||||||||||||||||||||| |||| |||||| | |||| |||||||| |||||||||||||||| |||| ||||| || ||||||| |
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| T |
10542763 |
gttaggaccaagacataagaatgccccggaagtcgacctcacattatctacatcagaggctgaatcaacatcacaatatgcctgcaaacatgtgggagac |
10542862 |
T |
|
| Q |
130 |
aaagggtaagcatcctgaagaactaaaccatgatccagagcctttcctttgagatatcacaaaattcactttactgcaatagagtaactctacaggggtt |
229 |
Q |
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| T |
10542863 |
aaaggagaagcatcttgcaaaactaaatcatgattcagagcccttcc-ttaagatatctcaaaattagcttgacagcaattcagtgactctgcagggttt |
10542961 |
T |
|
| Q |
230 |
gagccacaaa |
239 |
Q |
| |
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|||||||||| |
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| T |
10542962 |
gagccacaaa |
10542971 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 81 - 187
Target Start/End: Original strand, 27965675 - 27965781
Alignment:
| Q |
81 |
atcagaggtccaatcaacatcacaataggcctacaaacttgggggagacaaagggtaagcatcctgaagaactaaaccatgatccagagcctttcctttg |
180 |
Q |
| |
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|||||||||||||||||||||||||||||| | |||||||| || ||||||||| |||||| | ||||||||||||||||||| || || |||| |
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| T |
27965675 |
atcagaggtccaatcaacatcacaataggcttgcaaacttgtggaagacaaaggagaagcattacccacaactaaaccatgatccagaaccctttatttg |
27965774 |
T |
|
| Q |
181 |
agatatc |
187 |
Q |
| |
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||||||| |
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| T |
27965775 |
agatatc |
27965781 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 54; Significance: 5e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 81 - 186
Target Start/End: Complemental strand, 33579764 - 33579659
Alignment:
| Q |
81 |
atcagaggtccaatcaacatcacaataggcctacaaacttgggggagacaaagggtaagcatcctgaagaactaaaccatgatccagagcctttcctttg |
180 |
Q |
| |
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|||||| ||| ||||||||||||||||||||| |||||||| |||||||||||| ||||||| || | ||||||| |||||||||||||| || |||| |
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| T |
33579764 |
atcagacgtctaatcaacatcacaataggcctgcaaacttgagggagacaaaggagaagcatcttgcaaaactaaatcatgatccagagccattgctttc |
33579665 |
T |
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| Q |
181 |
agatat |
186 |
Q |
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|||||| |
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| T |
33579664 |
agatat |
33579659 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 17733925 - 17733983
Alignment:
| Q |
30 |
gttaggaccaagacataagaatgccccgaaagtagacctcgtgctgtctatatcagagg |
88 |
Q |
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||||||||||||||||||||||||| || |||||||||||||| | ||||||||||||| |
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| T |
17733925 |
gttaggaccaagacataagaatgcctcggaagtagacctcgtgatatctatatcagagg |
17733983 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 18489403 - 18489461
Alignment:
| Q |
30 |
gttaggaccaagacataagaatgccccgaaagtagacctcgtgctgtctatatcagagg |
88 |
Q |
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||||||||||||||||||||||||| || |||||||||||||| | ||||||||||||| |
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| T |
18489403 |
gttaggaccaagacataagaatgcctcggaagtagacctcgtgatatctatatcagagg |
18489461 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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