View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_low_68 (Length: 284)

Name: NF16068_low_68
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_low_68
NF16068_low_68
[»] chr4 (8 HSPs)
chr4 (1-263)||(29676426-29676688)
chr4 (52-263)||(35968306-35968517)
chr4 (57-263)||(36636826-36637032)
chr4 (175-263)||(35974134-35974222)
chr4 (62-190)||(38863107-38863235)
chr4 (106-239)||(36668513-36668646)
chr4 (187-243)||(36607460-36607516)
chr4 (57-220)||(36909544-36909707)
[»] chr5 (2 HSPs)
chr5 (52-232)||(19658253-19658433)
chr5 (52-232)||(19675092-19675272)
[»] chr1 (1 HSPs)
chr1 (57-263)||(42602763-42602969)
[»] chr8 (1 HSPs)
chr8 (24-160)||(35335816-35335952)
[»] chr6 (1 HSPs)
chr6 (62-138)||(33844287-33844363)
[»] chr2 (2 HSPs)
chr2 (67-120)||(43864074-43864127)
chr2 (67-120)||(43875241-43875294)
[»] chr7 (1 HSPs)
chr7 (82-114)||(32413649-32413681)
[»] chr3 (1 HSPs)
chr3 (52-112)||(25596897-25596957)


Alignment Details
Target: chr4 (Bit Score: 255; Significance: 1e-142; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 255; E-Value: 1e-142
Query Start/End: Original strand, 1 - 263
Target Start/End: Original strand, 29676426 - 29676688
Alignment:
Q  1 aggaagaaaacaaagaaggtgaagacaggctaagcaacttatcggattgccttctacttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaac 100  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676426 aggaagaaaacaaagaaggtgaagacaggctaagcgacttatcggattgccttctacttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaac 29676525  T
Q  101 ttgcattttgtccaagagatatgaacatctctggaaacatatcccaactcttattttgcaagcttcaacatttcccactcttaaacaattttccaaattc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  29676526 ttgcattttgtccaagagatatgaacatctctggaaacatatcccaactcttattttgcaagcttcaacatttgccactcttaaacaattttccaaattc 29676625  T
Q  201 gtctctaaaattttgactcttcgtgatacctcgactgcactgctagctcttgatcttcaccgt 263  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29676626 gtctctaaaattttgactcttcgtgatacctcgactgcactgctagctcttgatcttcaccgt 29676688  T

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Target: chr4; HSP #2
Raw Score: 72; E-Value: 8e-33
Query Start/End: Original strand, 52 - 263
Target Start/End: Original strand, 35968306 - 35968517
Alignment:
Q  52 ttctacttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaacatatcccaactct 151  Q
    |||| |||| ||||||||| || ||| || | ||||| ||||||||||||||| |||||||||| ||||  |||||||||||||||| |||  |||||||    
T  35968306 ttctccttcacattttgtcattattggatacaaaacaggtcgttcaaacttgcgttttgtccaaaagatgggaacatctctggaaacgtatttcaactct 35968405  T
Q  152 tattttgcaagcttcaacatttcccactcttaaacaattttccaaattcgtctctaaaattttgactcttcgtgatacctcgactgcactgctagctctt 251  Q
    ||| ||| | |||||||  ||| ||||||  || |||||| |||  ||||| ||||| ||||||||||||||||||||||| | | |||||| |||||||    
T  35968406 tatgttgtatgcttcaagtttttccactccgaagcaatttgccatgttcgtgtctaagattttgactcttcgtgatacctcaattccactgcaagctctt 35968505  T
Q  252 gatcttcaccgt 263  Q
    ||| || |||||    
T  35968506 gatattgaccgt 35968517  T

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Target: chr4; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 57 - 263
Target Start/End: Complemental strand, 36637032 - 36636826
Alignment:
Q  57 cttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaacatatcccaactcttattt 156  Q
    |||| ||||||||| ||||||||| ||||||| || ||   ||||||  ||||||| |||||||    |||||||||||||| ||| ||||||||||| |    
T  36637032 cttcacattttgtcatttttgaataccaaacatgttgtcagaacttgtgttttgtctaagagatggagacatctctggaaacgtattccaactcttatgt 36636933  T
Q  157 tgcaagcttcaacatttcccactcttaaacaattttccaaattcgtctctaaaattttgactcttcgtgatacctcgactgcactgctagctcttgatct 256  Q
    || | || |||| |||| ||||| |||| |||||| |||  || || ||||| || |||||||||||||||||||| ||||||||||  |||||||||||    
T  36636932 tgtatgcatcaagattttccactgttaagcaatttgccatgtttgtgtctaacatattgactcttcgtgatacctcaactgcactgcacgctcttgatct 36636833  T
Q  257 tcaccgt 263  Q
    | |||||    
T  36636832 tgaccgt 36636826  T

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Target: chr4; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 175 - 263
Target Start/End: Original strand, 35974134 - 35974222
Alignment:
Q  175 ccactcttaaacaattttccaaattcgtctctaaaattttgactcttcgtgatacctcgactgcactgctagctcttgatcttcaccgt 263  Q
    |||||| ||| |||||| ||| |||||| | ||| ||||||||||||||||||||||| | |||||||| |||| ||||| || |||||    
T  35974134 ccactcgtaagcaatttgccatattcgtgtataagattttgactcttcgtgatacctcaattgcactgcaagctattgatattaaccgt 35974222  T

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Target: chr4; HSP #5
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 62 - 190
Target Start/End: Complemental strand, 38863235 - 38863107
Alignment:
Q  62 cattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaacatatcccaactcttattttgcaa 161  Q
    ||||||||| |  |||||| ||||||| | | ||| ||||||  |||||||||||||||   ||||||||| ||||| ||| ||| ||||||| |||||     
T  38863235 cattttgtcatcgttgaataccaaacatgccattcgaacttgtgttttgtccaagagatggaaacatctctcgaaacgtattccatctcttatattgcat 38863136  T
Q  162 gcttcaacatttcccactcttaaacaatt 190  Q
     |||||| |||| ||||| ||||||||||    
T  38863135 tcttcaagattttccactgttaaacaatt 38863107  T

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Target: chr4; HSP #6
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 106 - 239
Target Start/End: Complemental strand, 36668646 - 36668513
Alignment:
Q  106 ttttgtccaagagatatgaacatctctggaaacatatcccaactcttattttgcaagcttcaacatttcccactcttaaacaattttccaaattcgtctc 205  Q
    ||||||| |||||||  |||||||||||||||| |||  |||| ||||| |||||  |||| | |||| ||  | |||| |||||| | | ||| || ||    
T  36668646 ttttgtcaaagagatgggaacatctctggaaacgtatttcaacccttatattgcattcttctagattttcctatgttaagcaatttacaacatttgtgtc 36668547  T
Q  206 taaaattttgactcttcgtgatacctcgactgca 239  Q
    ||| ||||||||||||||||||| ||| ||||||    
T  36668546 taagattttgactcttcgtgatagctcaactgca 36668513  T

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Target: chr4; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 187 - 243
Target Start/End: Complemental strand, 36607516 - 36607460
Alignment:
Q  187 aattttccaaattcgtctctaaaattttgactcttcgtgatacctcgactgcactgc 243  Q
    ||||| |||||||||| || || ||||||||||||||||||||||| | ||||||||    
T  36607516 aatttaccaaattcgtgtcaaatattttgactcttcgtgatacctcaattgcactgc 36607460  T

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Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 57 - 220
Target Start/End: Original strand, 36909544 - 36909707
Alignment:
Q  57 cttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaacatatcccaactcttattt 156  Q
    |||| |||||| || || |||||| ||||||| | |||   ||||||  |||| ||||||||||  | |||||||||||| |  || ||||||||||| |    
T  36909544 cttcacattttatcattcttgaataccaaacatgccgtcggaacttgtgttttttccaagagatggggacatctctggaagcgaattccaactcttatgt 36909643  T
Q  157 tgcaagcttcaacatttcccactcttaaacaattttccaaattcgtctctaaaattttgactct 220  Q
    | ||  |||||| |||| ||||| |||| |||||| | | |||||| ||||| |||||||||||    
T  36909644 tacattcttcaagattttccactattaagcaatttacaacattcgtgtctaagattttgactct 36909707  T

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Target: chr5 (Bit Score: 61; Significance: 3e-26; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 52 - 232
Target Start/End: Complemental strand, 19658433 - 19658253
Alignment:
Q  52 ttctacttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaacatatcccaactct 151  Q
    |||| |||| ||||||||| |||||| | || ||| | | ||||||||||||  ||||||||| |||||      |||||||||||| ||| ||||||||    
T  19658433 ttctccttcacattttgtcatttttggacgcaaaatatgccgttcaaacttgtgttttgtccacgagatggaggaatctctggaaacttattccaactct 19658334  T
Q  152 tattttgcaagcttcaacatttcccactcttaaacaattttccaaattcgtctctaaaattttgactcttcgtgatacctc 232  Q
    |||||||||  |||| | |||| ||||||| || |||||||||||||||||  |||| |||||||||||||||||||||||    
T  19658333 tattttgcattcttccaaattttccactctgaagcaattttccaaattcgtgcctaagattttgactcttcgtgatacctc 19658253  T

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Target: chr5; HSP #2
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 52 - 232
Target Start/End: Complemental strand, 19675272 - 19675092
Alignment:
Q  52 ttctacttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaacatatcccaactct 151  Q
    |||| |||| ||||||||| |||||| | || ||| | | ||||||||||||  ||||||||| |||||      |||||||||||| ||| ||||||||    
T  19675272 ttctccttcacattttgtcatttttggacgcaaaatatgccgttcaaacttgtgttttgtccacgagatggaggaatctctggaaacttattccaactct 19675173  T
Q  152 tattttgcaagcttcaacatttcccactcttaaacaattttccaaattcgtctctaaaattttgactcttcgtgatacctc 232  Q
    |||||||||  |||| | |||| ||||||| || |||||||| ||||||||  |||| |||||||||||||||||||||||    
T  19675172 tattttgcattcttccaaattttccactctgaagcaattttcgaaattcgtgcctaagattttgactcttcgtgatacctc 19675092  T

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Target: chr1 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 57 - 263
Target Start/End: Complemental strand, 42602969 - 42602763
Alignment:
Q  57 cttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaacatatcccaactcttattt 156  Q
    |||| ||||||||| ||| | ||  ||||||||  ||||||||||||||| |||||||| ||||   | | | | ||||||| ||| || |||||||| |    
T  42602969 cttcacattttgtcatttcttaactccaaacacaccgttcaaacttgcatcttgtccaaaagatggaagcttatgtggaaacgtattcctactcttatat 42602870  T
Q  157 tgcaagcttcaacatttcccactcttaaacaattttccaaattcgtctctaaaattttgactcttcgtgatacctcgactgcactgctagctcttgatct 256  Q
    || |  | ||||  ||||||||| | || || ||||||| ||| || ||||| ||||||||||||||||||||||| ||||||||||  |||||||||||    
T  42602869 tggattcctcaaactttcccactgtgaagcatttttccatatttgtgtctaagattttgactcttcgtgatacctcaactgcactgcatgctcttgatct 42602770  T
Q  257 tcaccgt 263  Q
    |||||||    
T  42602769 tcaccgt 42602763  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 24 - 160
Target Start/End: Original strand, 35335816 - 35335952
Alignment:
Q  24 gacaggctaagcaacttatcggattgccttctacttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatg 123  Q
    |||||| ||||  ||||| | |||||| ||||||||| ||||||||| || ||  || ||||||| || |||||||||||| |||||||||| ||||       
T  35335816 gacaggataagtgacttacctgattgcattctacttcacattttgtcattattacattccaaacaagttgttcaaacttgcgttttgtccaaaagatgga 35335915  T
Q  124 aacatctctggaaacatatcccaactcttattttgca 160  Q
    ||||||| ||||||| ||| ||||| ||||| |||||    
T  35335916 aacatctatggaaacgtattccaacacttatattgca 35335952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 62 - 138
Target Start/End: Complemental strand, 33844363 - 33844287
Alignment:
Q  62 cattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagatatgaacatctctggaaac 138  Q
    ||||||||| ||||||||  || || ||| |||||||||||||||||||||||  ||||   |||||||||||||||    
T  33844363 cattttgtcatttttgaaaaccgaaaacgccgttcaaacttgcattttgtccaccagatggaaacatctctggaaac 33844287  T

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Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 43864127 - 43864074
Alignment:
Q  67 tgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagat 120  Q
    |||| ||||||||||| ||| | | |||||||||||||||||||||||| ||||    
T  43864127 tgtcctttttgaatgcaaaaaaggccgttcaaacttgcattttgtccaaaagat 43864074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 67 - 120
Target Start/End: Complemental strand, 43875294 - 43875241
Alignment:
Q  67 tgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtccaagagat 120  Q
    |||| ||||| ||||| ||| | |||||||||||||||||||||||||| ||||    
T  43875294 tgtcctttttaaatgcaaaagaggtcgttcaaacttgcattttgtccaaaagat 43875241  T

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Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 82 - 114
Target Start/End: Original strand, 32413649 - 32413681
Alignment:
Q  82 ccaaacacgtcgttcaaacttgcattttgtcca 114  Q
    ||||||||| |||||||||||||||||||||||    
T  32413649 ccaaacacgccgttcaaacttgcattttgtcca 32413681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 52 - 112
Target Start/End: Original strand, 25596897 - 25596957
Alignment:
Q  52 ttctacttcgcattttgtcgtttttgaatgccaaacacgtcgttcaaacttgcattttgtc 112  Q
    |||| |||| ||||||||| ||||||||| ||||  | | |||||||||||||||||||||    
T  25596897 ttcttcttcacattttgtcatttttgaataccaagtatgccgttcaaacttgcattttgtc 25596957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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