View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_low_70 (Length: 279)

Name: NF16068_low_70
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_low_70
NF16068_low_70
[»] chr3 (9 HSPs)
chr3 (68-265)||(2447116-2447307)
chr3 (168-263)||(2485487-2485582)
chr3 (184-265)||(9564309-9564390)
chr3 (209-266)||(674985-675042)
chr3 (209-266)||(749581-749638)
chr3 (175-245)||(2634345-2634415)
chr3 (17-48)||(2447304-2447335)
chr3 (166-265)||(2495903-2495998)
chr3 (221-265)||(2641519-2641563)
[»] scaffold0019 (1 HSPs)
scaffold0019 (175-265)||(2567-2657)


Alignment Details
Target: chr3 (Bit Score: 167; Significance: 2e-89; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 68 - 265
Target Start/End: Complemental strand, 2447307 - 2447116
Alignment:
Q  68 atggaacaaaagtgtacaactctttttcttttagaattagaacaagtataacaaagtgaaagacaaggttatgcaaactattgagaacatatagaactag 167  Q
    ||||||||  ||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2447307 atggaacaggagtgtacaactctttttcttttagaa------caagtataacaaagtgaaagacaaggttatgcaaactattgagaacatatagaactag 2447214  T
Q  168 ttaaacggaacttaggaattccacaacactagaactgctaccctttttcaccgccatcttcagcaaagctccagaccataaaatgaacctaagcaatt 265  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2447213 ttaaacggaacttaggaattccacaacactagaactgctaccctttttcaccgccatcttcagcaaagctccagaccataaaatgaacctaagcaatt 2447116  T

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Target: chr3; HSP #2
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 168 - 263
Target Start/End: Complemental strand, 2485582 - 2485487
Alignment:
Q  168 ttaaacggaacttaggaattccacaacactagaactgctaccctttttcaccgccatcttcagcaaagctccagaccataaaatgaacctaagcaa 263  Q
    |||||| |||||||||||||| ||||||||||||||  ||||| |||||||| ||||||||||||| ||||||||||| ||||||||| |||||||    
T  2485582 ttaaactgaacttaggaattcgacaacactagaactattaccccttttcaccaccatcttcagcaaggctccagaccacaaaatgaacataagcaa 2485487  T

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Target: chr3; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 184 - 265
Target Start/End: Original strand, 9564309 - 9564390
Alignment:
Q  184 aattccacaacactagaactgctaccctttttcaccgccatcttcagcaaagctccagaccataaaatgaacctaagcaatt 265  Q
    |||||||| || ||| |||| | | |||||||||||||||||||||||||  |||||||||| |||||||||||||||||||    
T  9564309 aattccacgaccctaaaactacgatcctttttcaccgccatcttcagcaatactccagaccacaaaatgaacctaagcaatt 9564390  T

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Target: chr3; HSP #4
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 674985 - 675042
Alignment:
Q  209 cctttttcaccgccatcttcagcaaagctccagaccataaaatgaacctaagcaatta 266  Q
    ||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||    
T  674985 cctttttaacagccatcttcagcaacgctccagaccagaaaatgaacctaagcaatta 675042  T

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Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 749581 - 749638
Alignment:
Q  209 cctttttcaccgccatcttcagcaaagctccagaccataaaatgaacctaagcaatta 266  Q
    ||||||| || |||||||||||||| ||||||||||| ||||||||||||||||||||    
T  749581 cctttttaacagccatcttcagcaacgctccagaccagaaaatgaacctaagcaatta 749638  T

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Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 2634415 - 2634345
Alignment:
Q  175 gaacttaggaattccacaacactagaactgctaccctttttcaccgccatcttcagcaaagctccagacca 245  Q
    |||||| || |||||||||| ||| |||| |||||||||||||| |||||||||||||  |||||||||||    
T  2634415 gaacttggggattccacaaccctaaaactactaccctttttcacggccatcttcagcaccgctccagacca 2634345  T

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Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 48
Target Start/End: Complemental strand, 2447335 - 2447304
Alignment:
Q  17 agaatcaaacagacagcattgccatataatgg 48  Q
    ||||||||||||||||||||||||||||||||    
T  2447335 agaatcaaacagacagcattgccatataatgg 2447304  T

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Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 166 - 265
Target Start/End: Complemental strand, 2495998 - 2495903
Alignment:
Q  166 agttaaacggaacttaggaattccacaacactagaactgctaccctttttcaccgccatcttcagcaaagctccagaccataaaatgaacctaagcaatt 265  Q
    |||||||| ||| | ||||||||||||||||    |||  |||||  ||||||||||||||||||  ||||||||||||| ||||  |||||||| ||||    
T  2495998 agttaaactgaattcaggaattccacaacac----actattaccccctttcaccgccatcttcagtgaagctccagaccacaaaacaaacctaaggaatt 2495903  T

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Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 221 - 265
Target Start/End: Original strand, 2641519 - 2641563
Alignment:
Q  221 ccatcttcagcaaagctccagaccataaaatgaacctaagcaatt 265  Q
    ||||||| ||||||||||||||||| |||| ||||| ||||||||    
T  2641519 ccatctttagcaaagctccagaccacaaaaagaacccaagcaatt 2641563  T

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Target: scaffold0019 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 175 - 265
Target Start/End: Complemental strand, 2657 - 2567
Alignment:
Q  175 gaacttaggaattccacaacactagaactgctaccctttttcaccgccatcttcagcaaagctccagaccataaaatgaacctaagcaatt 265  Q
    |||||||||||||||||||| ||| ||||  ||||||||||||||||||| |||||||| ||||||||||   ||||||||||||||||||    
T  2657 gaacttaggaattccacaaccctaaaactattaccctttttcaccgccatattcagcaacgctccagacccacaaatgaacctaagcaatt 2567  T

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