View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16068_low_75 (Length: 265)
Name: NF16068_low_75
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_75 |
 | |
|
| [»] scaffold0224 (1 HSPs) |
| | |
|
Alignment Details
Target: scaffold0224 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: scaffold0224
Description:
Target: scaffold0224; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Complemental strand, 13993 - 13767
Alignment:
| Q |
1 |
atgattaaaagggtcacgaggttgtatctggggaaatcagcttcaatctcacatatcatacaaaaattaaatgtcccagaagccaaagccacttcacata |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
13993 |
atgattaaaagggtcacgaagttgtatctggggaaatcagcttcaatctcacatatcatacaaaaattaaatgtcccagaagacaaagccacttcacata |
13894 |
T |
|
| Q |
101 |
caacagataacgttccaggttaactctaatttcaccaacttcacatatcatacttaagtcatagttttattgctgcactaactacattcacacatgccat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
13893 |
caacagataacgttccaggttaactctaatttcaccaacttcacatatcatacttaagtcatagttttattgctgcactaacttcattcacacatgccat |
13794 |
T |
|
| Q |
201 |
aacagatgaaccatcttcatcctcaca |
227 |
Q |
| |
|
||||||||||||| ||||||| ||||| |
|
|
| T |
13793 |
aacagatgaaccaccttcatcttcaca |
13767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 227
Target Start/End: Original strand, 42932778 - 42933004
Alignment:
| Q |
1 |
atgattaaaagggtcacgaggttgtatctggggaaatcagcttcaatctcacatatcatacaaaaattaaatgtcccagaagccaaagccacttcacata |
100 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
42932778 |
atgattaaaagggtcacgaagttgtatctggggaaatcagcttcaatctcacatatcatacaaaaattaaatgtcccagaagacaaagccacttcacata |
42932877 |
T |
|
| Q |
101 |
caacagataacgttccaggttaactctaatttcaccaacttcacatatcatacttaagtcatagttttattgctgcactaactacattcacacatgccat |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
42932878 |
caacagataacgttccaggttaactctaatttcaccaacttcacatatcatacttaagtcatagttttattgctgcactaacttcattcacacatgccat |
42932977 |
T |
|
| Q |
201 |
aacagatgaaccatcttcatcctcaca |
227 |
Q |
| |
|
||||||||||||| ||||||| ||||| |
|
|
| T |
42932978 |
aacagatgaaccaccttcatcttcaca |
42933004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University