View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_low_78 (Length: 253)

Name: NF16068_low_78
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_low_78
NF16068_low_78
[»] chr7 (3 HSPs)
chr7 (19-245)||(5645182-5645410)
chr7 (126-196)||(31802468-31802538)
chr7 (104-181)||(43203500-43203578)
[»] chr3 (3 HSPs)
chr3 (104-210)||(43892090-43892197)
chr3 (129-193)||(39694096-39694160)
chr3 (128-193)||(34297466-34297532)
[»] chr1 (1 HSPs)
chr1 (141-196)||(5617591-5617646)
[»] chr8 (2 HSPs)
chr8 (27-115)||(24797810-24797899)
chr8 (135-179)||(7947563-7947607)
[»] scaffold0996 (1 HSPs)
scaffold0996 (126-213)||(1539-1626)
[»] chr2 (3 HSPs)
chr2 (104-210)||(16468356-16468463)
chr2 (129-195)||(30928222-30928288)
chr2 (126-196)||(36756964-36757034)
[»] chr4 (2 HSPs)
chr4 (126-196)||(54421417-54421487)
chr4 (161-210)||(43733948-43733997)
[»] chr5 (1 HSPs)
chr5 (126-198)||(13020926-13020998)


Alignment Details
Target: chr7 (Bit Score: 141; Significance: 5e-74; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 141; E-Value: 5e-74
Query Start/End: Original strand, 19 - 245
Target Start/End: Original strand, 5645182 - 5645410
Alignment:
Q  19 atagcatgatacttgttaatgcacttcatacctctaatactcctcttaatgaatttggggac-ttctgcttcaatgaaaatcattattgttaagtaaccc 117  Q
    |||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| || |||||||||| |||||||||||||||||||||||    
T  5645182 atagcaggatacttgttaatgcacttcatacctctaatactcctcttaataaatttggggaccttgtgcttcaatgtaaatcattattgttaagtaaccc 5645281  T
Q  118 tgactt-gcagtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatcctaactctcatatctttaattat 216  Q
     || || |  |||||||||||||| ||| ||||||| |||||| |||||| |||| ||||||||| |||||||||||||||| | ||||||||||||| |    
T  5645282 cgattttgtcgtgtcgtttgttcgaaggtaagcaaataagattgctcatagtattattagagctgtcttatctcatcctaacccccatatctttaattgt 5645381  T
Q  217 aaatgaaatgcagtgattctgcctttgct 245  Q
    |||||||||||||||||||||||||||||    
T  5645382 aaatgaaatgcagtgattctgcctttgct 5645410  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 126 - 196
Target Start/End: Original strand, 31802468 - 31802538
Alignment:
Q  126 agtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatccta 196  Q
    |||||||| ||||||||||||||| || ||| || |||||| ||||| ||||||| |||||| ||||||||    
T  31802468 agtgtcgtatgttcggaggcaagctaataaggttgctcatagtattgctagagcttccttatgtcatccta 31802538  T

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Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 104 - 181
Target Start/End: Complemental strand, 43203578 - 43203500
Alignment:
Q  104 ttgttaagtaaccctgact-tgcagtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctg 181  Q
    |||||||||||||| |||| || ||||||||||||| ||||||||||||| |  || |||||||| |||| ||||||||    
T  43203578 ttgttaagtaaccccgactatgtagtgtcgtttgttaggaggcaagcaaatagtatgactcataacattgctagagctg 43203500  T

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Target: chr3 (Bit Score: 36; Significance: 0.00000000002; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 104 - 210
Target Start/End: Original strand, 43892090 - 43892197
Alignment:
Q  104 ttgttaagtaaccctgact-tgcagtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatcctaactctc 202  Q
    |||||||||||||| |||| || ||||||||||||| ||||||||||||| |   |  ||||||| |||| |||||||||  ||||| |||||||| |||    
T  43892090 ttgttaagtaaccccgactatgtagtgtcgtttgttaggaggcaagcaaatagtgtggctcataacattgctagagctgctctatctaatcctaaccctc 43892189  T
Q  203 atatcttt 210  Q
    || |||||    
T  43892190 atctcttt 43892197  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 129 - 193
Target Start/End: Complemental strand, 39694160 - 39694096
Alignment:
Q  129 gtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatc 193  Q
    ||||||||||  |||||||||||| ||| |||||||||||||| ||| || || |||||||||||    
T  39694160 gtcgtttgtttagaggcaagcaaataagtttactcataatattattaaagttgtcttatctcatc 39694096  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 128 - 193
Target Start/End: Complemental strand, 34297532 - 34297466
Alignment:
Q  128 tgtcgtttgttcggaggcaagcaaacaagatta-ctcataatattgttagagctgccttatctcatc 193  Q
    ||||||||||| ||||||||| ||| ||| ||  |||||| |||||||||||| |||||||||||||    
T  34297532 tgtcgtttgttaggaggcaagtaaataaggtttgctcatattattgttagagccgccttatctcatc 34297466  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 141 - 196
Target Start/End: Original strand, 5617591 - 5617646
Alignment:
Q  141 gaggcaagcaaacaagattactcataatattgttagagctgccttatctcatccta 196  Q
    ||||||| |||||||||||||| |||| ||||| |||||| |||||||||||||||    
T  5617591 gaggcaaacaaacaagattacttataaaattgtcagagcttccttatctcatccta 5617646  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 27 - 115
Target Start/End: Original strand, 24797810 - 24797899
Alignment:
Q  27 atacttgttaatgcacttcatacctctaatactcctcttaatgaatttgggga-cttctgcttcaatgaaaatcattattgttaagtaac 115  Q
    ||||||||||||||| || ||||||||||||| || |||||| ||||| || | ||| ||||| |||| ||| | |||||||||||||||    
T  24797810 atacttgttaatgcaattaatacctctaatacaccgcttaattaatttaggaaccttgtgcttaaatgtaaaactttattgttaagtaac 24797899  T

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Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 135 - 179
Target Start/End: Complemental strand, 7947607 - 7947563
Alignment:
Q  135 tgttcggaggcaagcaaacaagattactcataatattgttagagc 179  Q
    |||| |||||||| |||||||||||| | ||||||||||||||||    
T  7947607 tgtttggaggcaaacaaacaagattattgataatattgttagagc 7947563  T

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Target: scaffold0996 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: scaffold0996
Description:

Target: scaffold0996; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 126 - 213
Target Start/End: Complemental strand, 1626 - 1539
Alignment:
Q  126 agtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatcctaactctcatatctttaat 213  Q
    |||||||| ||||||||||||||| || | | || |||||| ||||| ||||||| |||||| |||||||| | | ||||| ||||||    
T  1626 agtgtcgtatgttcggaggcaagctaatagggttgctcatagtattgctagagcttccttatgtcatcctagcccccatatttttaat 1539  T

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Target: chr2 (Bit Score: 32; Significance: 0.000000005; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 104 - 210
Target Start/End: Complemental strand, 16468463 - 16468356
Alignment:
Q  104 ttgttaagtaaccctgact-tgcagtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatcctaactctc 202  Q
    |||||||||||||| |||| || ||||||||||||| ||||| |||||||||   |  ||||||| |||| |||||||||  ||||| |||||| | |||    
T  16468463 ttgttaagtaaccccgactatgtagtgtcgtttgttaggaggtaagcaaacagtgtagctcataacattgctagagctgctctatctaatcctagccctc 16468364  T
Q  203 atatcttt 210  Q
    || |||||    
T  16468363 atgtcttt 16468356  T

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Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 129 - 195
Target Start/End: Original strand, 30928222 - 30928288
Alignment:
Q  129 gtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatcct 195  Q
    |||||||||| ||||||||  ||| ||| || |||||| ||||| |||||| |||||||||||||||    
T  30928222 gtcgtttgttaggaggcaaataaataaggttgctcatagtattgctagagccgccttatctcatcct 30928288  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 36757034 - 36756964
Alignment:
Q  126 agtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatccta 196  Q
    |||||||||| ||||||||||||| || ||  || |||||| ||||| ||||||| ||||||| |||||||    
T  36757034 agtgtcgtttattcggaggcaagctaataaagttgctcatagtattgctagagcttccttatcacatccta 36756964  T

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Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 126 - 196
Target Start/End: Complemental strand, 54421487 - 54421417
Alignment:
Q  126 agtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatccta 196  Q
    |||||||||| ||||||||||||| || ||| ||  ||||| ||||| ||||||| ||||||| |||||||    
T  54421487 agtgtcgtttattcggaggcaagctaataaggttggtcatagtattgctagagcttccttatcacatccta 54421417  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 161 - 210
Target Start/End: Original strand, 43733948 - 43733997
Alignment:
Q  161 ctcataatattgttagagctgccttatctcatcctaactctcatatcttt 210  Q
    |||||| ||||| ||||||||||||||||||||||| | | |||||||||    
T  43733948 ctcatagtattgctagagctgccttatctcatcctagcccccatatcttt 43733997  T

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Target: chr5 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 126 - 198
Target Start/End: Complemental strand, 13020998 - 13020926
Alignment:
Q  126 agtgtcgtttgttcggaggcaagcaaacaagattactcataatattgttagagctgccttatctcatcctaac 198  Q
    |||||||| |||||||||||||||||| ||| || || ||| ||||| ||||||  |||||||  ||||||||    
T  13020998 agtgtcgtatgttcggaggcaagcaaataaggttgcttatagtattgctagagcgtccttatccaatcctaac 13020926  T

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