View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_79 (Length: 252)
Name: NF16068_low_79
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_79 |
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Alignment Details
Target: chr4 (Bit Score: 218; Significance: 1e-120; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 15 - 236
Target Start/End: Original strand, 5148865 - 5149086
Alignment:
| Q |
15 |
atatcgaaatttacactagtgtttcaaattgtagaccacattgcttacaatattacagttgttacagtgtaatgtaatcaaccacaacatactaaaacca |
114 |
Q |
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| T |
5148865 |
atatcgaaatttacactagtgtttcaaattgtagaccacattgcttacaatattacagttgttacagtgtaatgtaatcaaccacaacatactaaaacca |
5148964 |
T |
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| Q |
115 |
gtattcaaacttggtaacaaagtgggtgcaaaaaccacattagactgcaacaaactatatagtgatcaggcaaatcattttgatatcttcctttctttat |
214 |
Q |
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| T |
5148965 |
gtattcaaacttggtaacaaagtgggtacaaaaaccacattagactgcaacaaactatatagtgatcaggcaaatcattttgatatcttcctttctttat |
5149064 |
T |
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| Q |
215 |
gtaaaagggttagagatatttt |
236 |
Q |
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| T |
5149065 |
gtaaaagggttagagatatttt |
5149086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 125 - 195
Target Start/End: Original strand, 7137285 - 7137355
Alignment:
| Q |
125 |
ttggtaacaaagtgggtgcaaaaaccacattagactgcaacaaactatatagtgatcaggcaaatcatttt |
195 |
Q |
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| T |
7137285 |
ttggtaacaatctgggtgcaacaaccacaatagactgcaacaaactatatagtgaaccggcaaatcatttt |
7137355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 195
Target Start/End: Original strand, 7121127 - 7121194
Alignment:
| Q |
128 |
gtaacaaagtgggtgcaaaaaccacattagactgcaacaaactatatagtgatcaggcaaatcatttt |
195 |
Q |
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| T |
7121127 |
gtaacaatctgggtgcaacaaccacaatagactgcaacaaactatatagtgaaccggcaaatcatttt |
7121194 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 55
Target Start/End: Original strand, 5177617 - 5177657
Alignment:
| Q |
15 |
atatcgaaatttacactagtgtttcaaattgtagaccacat |
55 |
Q |
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| T |
5177617 |
atatcgaaatttacactagtgtttcaaattgtagaccacat |
5177657 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 195 - 236
Target Start/End: Original strand, 5177949 - 5177990
Alignment:
| Q |
195 |
tgatatcttcctttctttatgtaaaagggttagagatatttt |
236 |
Q |
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| T |
5177949 |
tgatatcttcctttctttatgtaaaaaggttagagatatttt |
5177990 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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