View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_low_81 (Length: 250)

Name: NF16068_low_81
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_low_81
NF16068_low_81
[»] chr3 (4 HSPs)
chr3 (40-160)||(43533211-43533332)
chr3 (40-146)||(43528929-43529033)
chr3 (88-143)||(43537658-43537715)
chr3 (93-146)||(43523220-43523275)
[»] chr6 (3 HSPs)
chr6 (166-227)||(34955953-34956014)
chr6 (166-202)||(35035139-35035175)
chr6 (166-203)||(34974415-34974452)


Alignment Details
Target: chr3 (Bit Score: 70; Significance: 1e-31; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 40 - 160
Target Start/End: Original strand, 43533211 - 43533332
Alignment:
Q  40 ctgtcaaat-aatttatgtatatgcatgagtgtgattgnnnnnnnnccgttgtgttttacttgctcagtttggagtactcgtcatgttccgatgatcaca 138  Q
    ||||||||| ||||||||||||||||||||||||||||        |||||||||||||||||||||||||||||||| |||||||||  ||||||||||    
T  43533211 ctgtcaaattaatttatgtatatgcatgagtgtgattgttttttttccgttgtgttttacttgctcagtttggagtacccgtcatgtttggatgatcaca 43533310  T
Q  139 attactttataagtgaacgagc 160  Q
    ||||||||||||| ||| ||||    
T  43533311 attactttataagagaaagagc 43533332  T

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Target: chr3; HSP #2
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 40 - 146
Target Start/End: Original strand, 43528929 - 43529033
Alignment:
Q  40 ctgtcaaataatttatgtatatgcatgagtgtgattgnnnnnnnnccgttgtgttttacttg--ctcagtttggag--tactcgtcatgttccgatgatc 135  Q
    |||||||||||||||||||||||||||||| |||||          ||||||||||||||||  ||||||||||||  ||||||||||||| |||||||     
T  43528929 ctgtcaaataatttatgtatatgcatgagtatgatttttt------cgttgtgttttacttgtgctcagtttggagactactcgtcatgtttcgatgatt 43529022  T
Q  136 acaattacttt 146  Q
    |||||||||||    
T  43529023 acaattacttt 43529033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 88 - 143
Target Start/End: Original strand, 43537658 - 43537715
Alignment:
Q  88 ttgtgttttacttgctcagtttggag--tactcgtcatgttccgatgatcacaattac 143  Q
    ||||||||||||||||||||||||||  ||||||||||||| | ||||||||||||||    
T  43537658 ttgtgttttacttgctcagtttggagactactcgtcatgtttcaatgatcacaattac 43537715  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 93 - 146
Target Start/End: Original strand, 43523220 - 43523275
Alignment:
Q  93 ttttacttgctcagtttggag--tactcgtcatgttccgatgatcacaattacttt 146  Q
    |||||||||| |||||||||   ||||||||||||| | |||||||||||||||||    
T  43523220 ttttacttgcgcagtttggaaactactcgtcatgtttcaatgatcacaattacttt 43523275  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 166 - 227
Target Start/End: Original strand, 34955953 - 34956014
Alignment:
Q  166 ctgtggtggatgaaacggatgtgaagaacaaatctaaannnnnnngtgtttgacctaagggt 227  Q
    ||||||||||||||||||||||||||||||||||||||       |||||||||||||||||    
T  34955953 ctgtggtggatgaaacggatgtgaagaacaaatctaaatttttttgtgtttgacctaagggt 34956014  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 166 - 202
Target Start/End: Original strand, 35035139 - 35035175
Alignment:
Q  166 ctgtggtggatgaaacggatgtgaagaacaaatctaa 202  Q
    |||||||||||||||||||||||||||||||||||||    
T  35035139 ctgtggtggatgaaacggatgtgaagaacaaatctaa 35035175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 166 - 203
Target Start/End: Original strand, 34974415 - 34974452
Alignment:
Q  166 ctgtggtggatgaaacggatgtgaagaacaaatctaaa 203  Q
    ||||||||| ||||| ||||||||||||||||||||||    
T  34974415 ctgtggtggctgaaatggatgtgaagaacaaatctaaa 34974452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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