View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_82 (Length: 250)
Name: NF16068_low_82
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_82 |
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Alignment Details
Target: chr2 (Bit Score: 159; Significance: 9e-85; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 1 - 231
Target Start/End: Complemental strand, 10490183 - 10489953
Alignment:
| Q |
1 |
atcttgaccagccgggaggaaattaatgacaagttgtaattcgggtaaacttactcaggattaagggattggaggtcatcatagatgattattatgttat |
100 |
Q |
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| T |
10490183 |
atcttaaccagccgggagcaaatccgtggcaagttgtaattcgggtaaacttacttaggattaatggattggaggtcatcatagatgattattatgttat |
10490084 |
T |
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| Q |
101 |
taatcccagatagcaagcggtctgtagcgctgaacttcagaaatgctatgtcggtatagtagatagcgaaaacaccactattgtcaatctaggatagtga |
200 |
Q |
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| T |
10490083 |
taatcccagatagcaagcggcctgtagcgccgaacttcaaaaatgctatagcggtatagtagatagcgagaaagccactattgtcaatctaggatagtgg |
10489984 |
T |
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| Q |
201 |
agcagagttgaactgttgtttctattttgtt |
231 |
Q |
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| T |
10489983 |
agcagagttgagctgttgtttctattttgtt |
10489953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 31 - 230
Target Start/End: Complemental strand, 10494224 - 10494026
Alignment:
| Q |
31 |
aagttgtaattcgggtaaacttactcaggattaagggattggaggtcatcatagatgattattatgttattaatcccagatagcaagcggtctgtagcgc |
130 |
Q |
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| T |
10494224 |
aagttgtagatcaggtaaacttacttag-attaatggatttgaggtcattatagatgactattatgttgttaatcctagatagcaagcggcatgtagcgc |
10494126 |
T |
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| Q |
131 |
tgaacttcagaaatgctatgtcggtatagtagatagcgaaaacaccactattgtcaatctaggatagtgaagcagagttgaactgttgtttctattttgt |
230 |
Q |
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| T |
10494125 |
cgaaccccaaaaatgctatagcggtatagtagatagcaagaaagccactattgtcaatctaggatagtgaagcaaagttgagctattatttctattttgt |
10494026 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 100 - 230
Target Start/End: Original strand, 7477424 - 7477554
Alignment:
| Q |
100 |
ttaatcccagatagcaagcggtctgtagcgctgaacttcagaaatgctatgtcggtatagtagatagcgaaaacaccactattgtcaatctaggatagtg |
199 |
Q |
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||||||| ||||||||| ||| |||||||| |||| || ||||||||| |||||||||||||||| | || ||||||||||||||||||||||||| |
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| T |
7477424 |
ttaatcctagatagcaaacggcatgtagcgccgaaccccaaaaatgctattgcggtatagtagatagcaagaaagccactattgtcaatctaggatagtg |
7477523 |
T |
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| Q |
200 |
aagcagagttgaactgttgtttctattttgt |
230 |
Q |
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| T |
7477524 |
gagcaaagttgagctattgtttctattttgt |
7477554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 181 - 230
Target Start/End: Complemental strand, 10475843 - 10475795
Alignment:
| Q |
181 |
ttgtcaatctaggatagtgaagcagagttgaactgttgtttctattttgt |
230 |
Q |
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| T |
10475843 |
ttgtcaatctaggatagtggagcagagttgagc-gttgtttctattttgt |
10475795 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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