View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_84 (Length: 247)
Name: NF16068_low_84
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_84 |
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| [»] scaffold0199 (1 HSPs) |
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Alignment Details
Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 18 - 239
Target Start/End: Original strand, 26493290 - 26493511
Alignment:
| Q |
18 |
tatggaagtaagctcataacaactgatggcatgtcataagctctccgaaacagtctcaaaggttatgccagaagataagctagctcaagtaagtcaatcc |
117 |
Q |
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| T |
26493290 |
tatggaagtaagctcaaaacaactgatggcatgtcataagctctccgaaacagtctcaaaggttatgccagaagataagctagctcaagtaagtcaatcc |
26493389 |
T |
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| Q |
118 |
aaacagacccttaacaataggcataacttcaaagacggacagatcctctatatgatataggggatctatatgttaaaatgctcaacataacaccgacaat |
217 |
Q |
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| T |
26493390 |
aaacagacccttaacaataggcataacttcaaagacggacatatcccctatatgatataggggatctatatgttaaaatgctcaacataacaccgacaat |
26493489 |
T |
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| Q |
218 |
tcaaatcgaaggcatctctgct |
239 |
Q |
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| T |
26493490 |
tcaaatcgaaggcatgtctgct |
26493511 |
T |
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Target: chr5 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 131
Target Start/End: Original strand, 42646798 - 42646830
Alignment:
| Q |
99 |
agctcaagtaagtcaatccaaacagacccttaa |
131 |
Q |
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| T |
42646798 |
agctcaagtaagtcaatccaaacagacccttaa |
42646830 |
T |
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Target: scaffold0199 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0199
Description:
Target: scaffold0199; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 6859 - 6915
Alignment:
| Q |
20 |
tggaagtaagctcataacaactgatgg-catgtcataagctctccgaaacagtctca |
75 |
Q |
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| T |
6859 |
tggaaataaactcaaaacaactaatggacatgtcataagctctcccaaacagtctca |
6915 |
T |
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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 75
Target Start/End: Original strand, 1664418 - 1664474
Alignment:
| Q |
20 |
tggaagtaagctcataacaactgatgg-catgtcataagctctccgaaacagtctca |
75 |
Q |
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| T |
1664418 |
tggaaataaactcaaaacaactaatggacatgtcataagctctcccaaacagtctca |
1664474 |
T |
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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 27043772 - 27043740
Alignment:
| Q |
99 |
agctcaagtaagtcaatccaaacagacccttaa |
131 |
Q |
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| T |
27043772 |
agctcaaataagtcaatccaaacagacccttaa |
27043740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 99 - 131
Target Start/End: Complemental strand, 3887574 - 3887542
Alignment:
| Q |
99 |
agctcaagtaagtcaatccaaacagacccttaa |
131 |
Q |
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| T |
3887574 |
agctcaaataagtcaatccaaacagacccttaa |
3887542 |
T |
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