View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_low_9 (Length: 641)

Name: NF16068_low_9
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_low_9
NF16068_low_9
[»] chr6 (43 HSPs)
chr6 (38-627)||(5351617-5352206)
chr6 (11-221)||(5427328-5427538)
chr6 (389-625)||(5100650-5100894)
chr6 (389-625)||(5135751-5135995)
chr6 (179-398)||(5100403-5100625)
chr6 (212-412)||(5242066-5242270)
chr6 (226-396)||(5398510-5398676)
chr6 (241-398)||(5135566-5135726)
chr6 (326-410)||(5334555-5334640)
chr6 (543-625)||(5242506-5242588)
chr6 (543-625)||(2939134-2939216)
chr6 (476-541)||(5398379-5398444)
chr6 (548-625)||(5439230-5439307)
chr6 (443-536)||(5439361-5439454)
chr6 (545-625)||(5098430-5098510)
chr6 (548-623)||(5448830-5448905)
chr6 (323-412)||(5687573-5687661)
chr6 (461-527)||(5255984-5256050)
chr6 (543-625)||(5427119-5427201)
chr6 (548-625)||(5256113-5256190)
chr6 (452-541)||(5352691-5352780)
chr6 (109-221)||(5334901-5335011)
chr6 (549-625)||(5398265-5398341)
chr6 (543-625)||(5156007-5156089)
chr6 (543-625)||(5177958-5178040)
chr6 (165-239)||(5252874-5252948)
chr6 (543-625)||(5279783-5279865)
chr6 (543-625)||(5372316-5372398)
chr6 (543-625)||(5688897-5688979)
chr6 (548-625)||(5180773-5180850)
chr6 (572-625)||(5334404-5334457)
chr6 (484-551)||(5242371-5242438)
chr6 (366-412)||(5255884-5255930)
chr6 (546-625)||(5346248-5346327)
chr6 (461-542)||(5180644-5180725)
chr6 (546-625)||(5072679-5072758)
chr6 (345-410)||(5155768-5155832)
chr6 (475-530)||(5448965-5449020)
chr6 (543-625)||(5126623-5126705)
chr6 (366-412)||(5180552-5180598)
chr6 (548-625)||(5283223-5283300)
chr6 (476-521)||(5334453-5334498)
chr6 (545-625)||(23127306-23127386)
[»] chr3 (12 HSPs)
chr3 (298-412)||(47985062-47985177)
chr3 (298-412)||(47994349-47994464)
chr3 (298-412)||(48003636-48003751)
chr3 (298-412)||(48012921-48013036)
chr3 (549-625)||(47985393-47985469)
chr3 (549-625)||(47994680-47994756)
chr3 (549-625)||(48003967-48004043)
chr3 (549-625)||(48013252-48013328)
chr3 (461-529)||(47985230-47985298)
chr3 (461-529)||(47994517-47994585)
chr3 (461-529)||(48003804-48003872)
chr3 (461-529)||(48013089-48013157)
[»] scaffold1476 (1 HSPs)
scaffold1476 (427-464)||(191-228)


Alignment Details
Target: chr6 (Bit Score: 574; Significance: 0; HSPs: 43)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 574; E-Value: 0
Query Start/End: Original strand, 38 - 627
Target Start/End: Complemental strand, 5352206 - 5351617
Alignment:
Q  38 aactcgtggagagaaatttgccaagaactcgtcgcacaaagttggttaaaaataaatgtggttgcaggatttttaagcaaattaaatgagctttgagaaa 137  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5352206 aactcgtggagagaaatttgccaagaactcgtcgcacaaagttggttaaaaataaatgtggttgcaggatttttaagcaaattaaatgagctttgagaaa 5352107  T
Q  138 gataatcattgagtctgagaatgaggatgtggtaaaattgacaaatcagagtttcttcttggcagtcatatatcctatcattcatgagtacagaagcttt 237  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  5352106 gataatcattgagtctgagaatgaggatgtggtaaaattgacaaatcagagtttcttcttggcagtcatatatgctatcattcatgagtacagaagcttt 5352007  T
Q  238 cttaacatttaaatgctgtaactataaagcccattttgttaaaagacttttaaatagtacatgacatggaacaattgtaacagaacaaattagaatcttt 337  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5352006 cttaacatttaaatgctgtaactataaagcccattttgttaaaagacttttaaatagtacatgacatggaacaattgtaacagaacaaattagaatcttt 5351907  T
Q  338 caccactctttgtgaataaaaaattcaacatggataaaatcaagaaactacagccaaaaatggaaaacaattgttagcagtcaacataaaattgattttt 437  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||||||||    
T  5351906 caccactctttgtgaataaaaaattcaacatggataaaatcaagaaactacagccaaaaatggaaaacaattgttagccgtcaccataaaattgattttt 5351807  T
Q  438 gctccgccattgctttactatctttcaatccactcagtttttcttctttctgttctgattaaggtcatcagtgggctcctcttcagtagagaatctcttg 537  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5351806 gctccgccattgctttactatctttcaatccactcagtttttcttctttctgttctgattaaggtcatcagtgggctcctcttcagtagagaatctcttg 5351707  T
Q  538 acagatggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttactg 627  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||    
T  5351706 acagatggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaatgacctccactttgttactg 5351617  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 183; E-Value: 1e-98
Query Start/End: Original strand, 11 - 221
Target Start/End: Complemental strand, 5427538 - 5427328
Alignment:
Q  11 cagagaccatccacttcaaatgataaaaactcgtggagagaaatttgccaagaactcgtcgcacaaagttggttaaaaataaatgtggttgcaggatttt 110  Q
    |||||||||||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||    
T  5427538 cagagaccatccactttaaatgataaaaactcatggagagaaatttgccaagaactcgtcgcacaaagttggttaaaaataaatgttgttgcaggatgtt 5427439  T
Q  111 taagcaaattaaatgagctttgagaaagataatcattgagtctgagaatgaggatgtggtaaaattgacaaatcagagtttcttcttggcagtcatatat 210  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||    
T  5427438 taagcaaattaaatgagctttgagaaagataatcattgagtctgagaatgaggttgtggtaaaattgataaatcagagtttcttcttggcagccatatat 5427339  T
Q  211 cctatcattca 221  Q
    |||||||||||    
T  5427338 cctatcattca 5427328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 389 - 625
Target Start/End: Original strand, 5100650 - 5100894
Alignment:
Q  389 agccaaaaatggaaaacaattgttagcagtcaacataaaattgatttttgctccgccattgctttactatctttcaat--------ccactcagtttttc 480  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||||||| |        |||||| |||||||    
T  5100650 agccaaaaatggaaaacaattgttagcagtcatcataaaattgatttttgctcggccattgcattactatctttcattgattcattccactcggtttttc 5100749  T
Q  481 ttctttctgttctgattaaggtcatcagtgggctcctcttcagtagagaatctcttgacagatggttcatcatatacgagataaactactgtctttttca 580  Q
    ||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  5100750 ttctttctgttctgattgaagtcatcagtgggctcctcttcagtagagaatctcttgacagatggttcatcgtatacgagataaactgctgtctttttca 5100849  T
Q  581 caatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    ||||| ||   ||||| ||||||| ||||||||||||||||||||    
T  5100850 caatgaaactgttctcaaaaacaacaacgacctccactttgttac 5100894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 156; E-Value: 1e-82
Query Start/End: Original strand, 389 - 625
Target Start/End: Original strand, 5135751 - 5135995
Alignment:
Q  389 agccaaaaatggaaaacaattgttagcagtcaacataaaattgatttttgctccgccattgctttactatctt--------tcaatccactcagtttttc 480  Q
    |||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||        ||| ||||||| |||||||    
T  5135751 agccaaaaatggaaaacaattgttagcagtcatcataaaattgatttttgctcggccattgctttactatcttccattgattcattccactcggtttttc 5135850  T
Q  481 ttctttctgttctgattaaggtcatcagtgggctcctcttcagtagagaatctcttgacagatggttcatcatatacgagataaactactgtctttttca 580  Q
    ||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||    
T  5135851 ttctttctgttctgattgaagtcatcattgggctcctcttcagtagagaatctcttgacagatggttcatcgtatacgagataaactgctgtctttttca 5135950  T
Q  581 caatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    ||||| ||   ||||| ||||||| ||||||||||||||||||||    
T  5135951 caatgaaactgttctcaaaaacaacaacgacctccactttgttac 5135995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 111; E-Value: 1e-55
Query Start/End: Original strand, 179 - 398
Target Start/End: Original strand, 5100403 - 5100625
Alignment:
Q  179 caaatcagagtttcttcttggcagtcatatatcctatcattcatgagtacagaagctttcttaacatttaaatgctgtaactataa-agcccattttgtt 277  Q
    ||||||||||||||||||||||||  ||||||||||| ||| | || |||||||| || || |||||||||||||| |||||||   || ||||||||||    
T  5100403 caaatcagagtttcttcttggcagctatatatcctattatttaggactacagaagtttgctaaacatttaaatgctataactatttgagtccattttgtt 5100502  T
Q  278 aaaagacttttaaatagtacatgacatggaacaattgtaacagaacaaattagaatctttcaccactctttgtgaata-aaaaattcaacatggataaaa 376  Q
    ||||||| ||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||  |||||||||||||| ||||||||| || ||||||||    
T  5100503 aaaagacatttaaatggtatatgacatggaagaattgtaacagaacaaattagaatctttcagaactctttgtgaatacaaaaattcaccaaggataaaa 5100602  T
Q  377 tcaagaaactacag-ccaaaaat 398  Q
    || ||||||||||| ||||||||    
T  5100603 tctagaaactacagaccaaaaat 5100625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 108; E-Value: 6e-54
Query Start/End: Original strand, 212 - 412
Target Start/End: Original strand, 5242066 - 5242270
Alignment:
Q  212 ctatcattcatgagtacagaagctttcttaacatttaa----atgctgtaactataaagcccattttgttaaaagacttttaaatagtacatgacatgga 307  Q
    ||||||||||||| ||||||||||||| | ||||||||    ||||||| |||||  |||||||||||||||||||| ||||||| |||||||||||| |    
T  5242066 ctatcattcatgactacagaagctttcatgacatttaattaaatgctgtgactattgagcccattttgttaaaagacatttaaatggtacatgacatgaa 5242165  T
Q  308 acaattgtaacagaacaaattagaatctttcaccactctttgtgaataaaaaattcaacatggataaaatcaagaaactacagccaaaaatggaaaacaa 407  Q
    | |||| ||||| |||||||||||| ||||||||||||| ||| ||||||||||||| ||||||||||||| |||||||||||  ||| |||||||||||    
T  5242166 agaattataacataacaaattagaaactttcaccactctctgtcaataaaaaattcaccatggataaaatctagaaactacagaaaaagatggaaaacaa 5242265  T
Q  408 ttgtt 412  Q
    |||||    
T  5242266 ttgtt 5242270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 226 - 396
Target Start/End: Complemental strand, 5398676 - 5398510
Alignment:
Q  226 tacagaagctttcttaacatttaaatgctgtaactataaagcccattttgttaaaagacttttaaatagtacatgacatggaacaattgtaacagaacaa 325  Q
    |||||||||||  || ||||| ||||||| |||||||  || |||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  5398676 tacagaagcttggtttacattgaaatgctataactattgagtccatttagttaaaagacttttaaatagtacatgacatggaagaattgtaacagaacaa 5398577  T
Q  326 attagaatctttcaccactctttgtgaataaaaaattcaacatggataaaatcaagaaactacagccaaaa 396  Q
    ||||||||||||||||||||    ||||||||||||||| ||||||||||||| |||||||  ||||||||    
T  5398576 attagaatctttcaccactc----tgaataaaaaattcaccatggataaaatctagaaacttaagccaaaa 5398510  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 241 - 398
Target Start/End: Original strand, 5135566 - 5135726
Alignment:
Q  241 aacatttaaatgctgtaactataa-agcccattttgttaaaagacttttaaatagtacatgacatggaacaattgtaacagaacaaattagaatctttca 339  Q
    |||||||||||||| |||||||   || ||||||||||||||||| ||||||| ||| || |||||||| ||||||||||||||||||||||||||||||    
T  5135566 aacatttaaatgctataactatttgagtccattttgttaaaagacatttaaatggtatataacatggaagaattgtaacagaacaaattagaatctttca 5135665  T
Q  340 ccactctttgtgaata-aaaaattcaacatggataaaatcaagaaactacag-ccaaaaat 398  Q
      ||||||| |||||| ||||||||| || | |||||||| ||||||||||| ||||||||    
T  5135666 gaactctttttgaatacaaaaattcaccaagaataaaatctagaaactacagaccaaaaat 5135726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 326 - 410
Target Start/End: Complemental strand, 5334640 - 5334555
Alignment:
Q  326 attagaatctttcaccactctttgtgaata-aaaaattcaacatggataaaatcaagaaactacagccaaaaatggaaaacaattg 410  Q
    |||||||||||||||||||||||||||||| ||||||||| ||||||||||||| ||||||| |||||||||||||||||||||||    
T  5334640 attagaatctttcaccactctttgtgaatacaaaaattcaccatggataaaatctagaaacttcagccaaaaatggaaaacaattg 5334555  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 543 - 625
Target Start/End: Original strand, 5242506 - 5242588
Alignment:
Q  543 tggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    ||||||||||||||||||||||||||||||||| ||||||||| ||   ||||| ||||||||||||||||||||||||||||    
T  5242506 tggttcatcatatacgagataaactactgtcttcttcacaatgaaactgttctcaaaaacaaaaacgacctccactttgttac 5242588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 543 - 625
Target Start/End: Complemental strand, 2939216 - 2939134
Alignment:
Q  543 tggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    ||||||||||||||||||||||| |  || ||| |||||||||||||||||||||| |||||||  |||||||||||||||||    
T  2939216 tggttcatcatatacgagataaattgttgccttcttcacaatgcaatcattctcgataacaaaatggacctccactttgttac 2939134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 476 - 541
Target Start/End: Complemental strand, 5398444 - 5398379
Alignment:
Q  476 ttttcttctttctgttctgattaaggtcatcagtgggctcctcttcagtagagaatctcttgacag 541  Q
    ||||||||||||| |||||||| | ||||||||||||||| |||||||||||||||||||||||||    
T  5398444 ttttcttctttcttttctgattgaagtcatcagtgggctcatcttcagtagagaatctcttgacag 5398379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 548 - 625
Target Start/End: Complemental strand, 5439307 - 5439230
Alignment:
Q  548 catcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    ||||||||||||||||| || ||||||||||  ||||| ||||||||| |||||||||||| ||||||||||||||||    
T  5439307 catcatatacgagataagctgctgtctttttggcaatgaaatcattcttgaaaacaaaaacaacctccactttgttac 5439230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 443 - 536
Target Start/End: Complemental strand, 5439454 - 5439361
Alignment:
Q  443 gccattgctttactatctttcaatccactcagtttttcttctttctgttctgattaaggtcatcagtgggctcctcttcagtagagaatctctt 536  Q
    ||||||| ||||| || ||||| |||| ||  |||||||||||||||||| |||| | ||||||||||||||||||| ||||||||||||||||    
T  5439454 gccattgttttaccatttttcattccattcgatttttcttctttctgttccgattgaagtcatcagtgggctcctctccagtagagaatctctt 5439361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 545 - 625
Target Start/End: Complemental strand, 5098510 - 5098430
Alignment:
Q  545 gttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    ||||||||||||| ||||||||| ||||||||||||||||| ||   ||||||||||||| || |||||||||||||||||    
T  5098510 gttcatcatataccagataaactgctgtctttttcacaatgaaactgttctcgaaaacaacaatgacctccactttgttac 5098430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 548 - 623
Target Start/End: Complemental strand, 5448905 - 5448830
Alignment:
Q  548 catcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgtt 623  Q
    |||||||||| ||||| ||||||||||| | |||| || |||||||||||||||||||||||| ||||||||||||    
T  5448905 catcatataccagatatactactgtcttctccacagtgaaatcattctcgaaaacaaaaacgatctccactttgtt 5448830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 323 - 412
Target Start/End: Complemental strand, 5687661 - 5687573
Alignment:
Q  323 caaattagaatctttcaccactctttgtgaata-aaaaattcaacatggataaaatcaagaaactacagccaaaaatggaaaacaattgtt 412  Q
    |||||||||||||||||  |||||||||||||| ||||||||| |  |||||||||| ||||||| ||||||||| |||||||||||||||    
T  5687661 caaattagaatctttcaaaactctttgtgaatacaaaaattcacc--ggataaaatctagaaactgcagccaaaattggaaaacaattgtt 5687573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 461 - 527
Target Start/End: Original strand, 5255984 - 5256050
Alignment:
Q  461 ttcaatccactcagtttttcttctttctgttctgattaaggtcatcagtgggctcctcttcagtaga 527  Q
    |||| ||||||| |||||||||||||||||||||||| |  ||||||||||||||||||||||||||    
T  5255984 ttcattccactcggtttttcttctttctgttctgattgaaatcatcagtgggctcctcttcagtaga 5256050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 543 - 625
Target Start/End: Complemental strand, 5427201 - 5427119
Alignment:
Q  543 tggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    |||||||||||||||||||||||||||||||||  |||||| | ||   ||||| ||||||||||||||||||| ||||||||    
T  5427201 tggttcatcatatacgagataaactactgtcttcgtcacaacgaaactgttctcaaaaacaaaaacgacctccattttgttac 5427119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 548 - 625
Target Start/End: Original strand, 5256113 - 5256190
Alignment:
Q  548 catcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    |||||||||| | ||||| | ||||||| ||||||||| ||||||||| ||||||||| |||||||||||||||||||    
T  5256113 catcatataccaaataaattgctgtcttcttcacaatgaaatcattcttgaaaacaaatacgacctccactttgttac 5256190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 452 - 541
Target Start/End: Original strand, 5352691 - 5352780
Alignment:
Q  452 ttactatctttcaatccactcagtttttcttctttctgttctgattaaggtcatcagtgggctcctcttcagtagagaatctcttgacag 541  Q
    |||| |||||||| |||| ||  ||||||||||||||||||||||| |  || |||||| ||||||||||| ||||||||||||||||||    
T  5352691 ttaccatctttcattccattcgatttttcttctttctgttctgattgacatcttcagtgtgctcctcttcaatagagaatctcttgacag 5352780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 109 - 221
Target Start/End: Complemental strand, 5335011 - 5334901
Alignment:
Q  109 tttaagcaaattaaatgagctttgagaaagataatcattgagtctgagaatgaggatgtggtaaaattgacaaatcagagtttcttcttggcagtcatat 208  Q
    ||||||||||| |||| ||||| ||| |||||||||||||||||||||| |||   | ||| |||||| |||||||||||||| | ||||| || |||||    
T  5335011 tttaagcaaatgaaataagctt-gagcaagataatcattgagtctgagattgactttttggaaaaattcacaaatcagagtttttacttgggag-catat 5334914  T
Q  209 atcctatcattca 221  Q
    |||||||||||||    
T  5334913 atcctatcattca 5334901  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 549 - 625
Target Start/End: Complemental strand, 5398341 - 5398265
Alignment:
Q  549 atcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    ||||||||| |||||||||  |||||| ||||||||| ||||||||||||||||||| || ||||| ||||||||||    
T  5398341 atcatatacaagataaactgttgtcttcttcacaatgaaatcattctcgaaaacaaagacaacctcaactttgttac 5398265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 543 - 625
Target Start/End: Original strand, 5156007 - 5156089
Alignment:
Q  543 tggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    ||||||||| ||||| |||||||||  |||||| ||||||||| ||| | ||||||||||||||  |||||||||||||||||    
T  5156007 tggttcatcgtatacaagataaactgttgtcttcttcacaatgaaattaatctcgaaaacaaaatggacctccactttgttac 5156089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 543 - 625
Target Start/End: Complemental strand, 5178040 - 5177958
Alignment:
Q  543 tggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    |||||||||||||||||||||||||  ||| || ||||||||| || | ||||| ||||||| ||| ||||||||||||||||    
T  5178040 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttac 5177958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 165 - 239
Target Start/End: Original strand, 5252874 - 5252948
Alignment:
Q  165 tgtggtaaaattgacaaatcagagtttcttcttggcagtcatatatcctatcattcatgagtacagaagctttct 239  Q
    |||||||||||| ||| || |||||||||||||||||| |||||||| ||||||||| || || |||||||||||    
T  5252874 tgtggtaaaattcacagattagagtttcttcttggcaggcatatatcatatcattcaggactaaagaagctttct 5252948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 543 - 625
Target Start/End: Complemental strand, 5279865 - 5279783
Alignment:
Q  543 tggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    |||||||||||||||||||||||||  ||| || ||||||||| || | ||||| ||||||| ||| ||||||||||||||||    
T  5279865 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacaacaacaacctccactttgttac 5279783  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #28
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 543 - 625
Target Start/End: Complemental strand, 5372398 - 5372316
Alignment:
Q  543 tggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    ||||||||| ||||||||||||| |  |||||| ||||||||| |||||||||||| |||||||  || ||||||||||||||    
T  5372398 tggttcatcgtatacgagataaattgttgtcttcttcacaatgaaatcattctcgagaacaaaatggatctccactttgttac 5372316  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #29
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 543 - 625
Target Start/End: Original strand, 5688897 - 5688979
Alignment:
Q  543 tggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    |||||||||||||||||||||||||  ||| || ||||||||| || | ||||| |||||| |||| ||||||||||||||||    
T  5688897 tggttcatcatatacgagataaactgttgttttcttcacaatgaaaccgttctcaaaaacagaaacaacctccactttgttac 5688979  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #30
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 548 - 625
Target Start/End: Original strand, 5180773 - 5180850
Alignment:
Q  548 catcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    |||||||||| ||||||| | ||||||| ||||||||| ||   ||||| ||||||||||||||||||||||||||||    
T  5180773 catcatataccagataaattgctgtcttcttcacaatgaaacttttctcaaaaacaaaaacgacctccactttgttac 5180850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #31
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 572 - 625
Target Start/End: Complemental strand, 5334457 - 5334404
Alignment:
Q  572 tctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    |||| |||| |||| |||||||||||||||||||||||||||||||||||||||    
T  5334457 tcttcttcaaaatgaaatcattctcgaaaacaaaaacgacctccactttgttac 5334404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #32
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 484 - 551
Target Start/End: Original strand, 5242371 - 5242438
Alignment:
Q  484 tttctgttctgattaaggtcatcagtgggctcctcttcagtagagaatctcttgacagatggttcatc 551  Q
    |||| ||||||||| | ||||||||  ||||||||||||||||||||||||||||||||  |||||||    
T  5242371 tttccgttctgattgaagtcatcagcaggctcctcttcagtagagaatctcttgacagagcgttcatc 5242438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #33
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 5255884 - 5255930
Alignment:
Q  366 catggataaaatcaagaaactacagccaaaaatggaaaacaattgtt 412  Q
    ||||||||||||| ||||||| |||||||||||||||||||||||||    
T  5255884 catggataaaatctagaaacttcagccaaaaatggaaaacaattgtt 5255930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #34
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 546 - 625
Target Start/End: Complemental strand, 5346327 - 5346248
Alignment:
Q  546 ttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    ||||||||||| |||||||| | ||||||| ||||||||| || ||||||| | |||||  || ||||||||||||||||    
T  5346327 ttcatcatatatgagataaattgctgtcttcttcacaatgaaaccattctcaataacaacgacaacctccactttgttac 5346248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #35
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 461 - 542
Target Start/End: Original strand, 5180644 - 5180725
Alignment:
Q  461 ttcaatccactcagtttttcttctttctgttctgattaaggtcatcagtgggctcctcttcagtagagaatctcttgacaga 542  Q
    |||| ||||||| |||||||||||||||||||||||| | ||| || | | | || ||||||| |||||||||||| |||||    
T  5180644 ttcattccactcggtttttcttctttctgttctgattgaagtcgtcggcgtgttcgtcttcagcagagaatctcttcacaga 5180725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #36
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 546 - 625
Target Start/End: Original strand, 5072679 - 5072758
Alignment:
Q  546 ttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    |||||| |||| |||||||| || |||||||||||||||| |||| ||||| | |||||  || |||||||||| |||||    
T  5072679 ttcatcgtatatgagataaattattgtctttttcacaatgaaatcgttctcaacaacaacgacaacctccacttggttac 5072758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #37
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 345 - 410
Target Start/End: Original strand, 5155768 - 5155832
Alignment:
Q  345 ctttgtgaata-aaaaattcaacatggataaaatcaagaaactacagccaaaaatggaaaacaattg 410  Q
    ||||||||||| ||||||| | |||||||||  |||||||||| |||||||||||||| ||||||||    
T  5155768 ctttgtgaatataaaaatttaccatggataa--tcaagaaacttcagccaaaaatggagaacaattg 5155832  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #38
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 475 - 530
Target Start/End: Complemental strand, 5449020 - 5448965
Alignment:
Q  475 tttttcttctttctgttctgattaaggtcatcagtgggctcctcttcagtagagaa 530  Q
    ||||||||||||||||||||||| | |||||| | ||| || ||||||||||||||    
T  5449020 tttttcttctttctgttctgattgaagtcatctgcgggatcgtcttcagtagagaa 5448965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 543 - 625
Target Start/End: Original strand, 5126623 - 5126705
Alignment:
Q  543 tggttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    |||||||||||||| |||||||||  ||||||| ||||||||| || | ||||  ||||||| ||| | ||| ||||||||||    
T  5126623 tggttcatcatatatgagataaacagctgtcttcttcacaatgaaaccgttcttaaaaacaacaacaatctcaactttgttac 5126705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 366 - 412
Target Start/End: Original strand, 5180552 - 5180598
Alignment:
Q  366 catggataaaatcaagaaactacagccaaaaatggaaaacaattgtt 412  Q
    ||||||||||||| | ||||| ||||| |||||||||||||||||||    
T  5180552 catggataaaatctaaaaacttcagccgaaaatggaaaacaattgtt 5180598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 548 - 625
Target Start/End: Original strand, 5283223 - 5283300
Alignment:
Q  548 catcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    |||||||||| ||||||| | ||||||| ||||||||| ||   || || |||||||| | |||||||||||||||||    
T  5283223 catcatataccagataaattgctgtcttcttcacaatgaaactgttttcaaaaacaaatatgacctccactttgttac 5283300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 476 - 521
Target Start/End: Complemental strand, 5334498 - 5334453
Alignment:
Q  476 ttttcttctttctgttctgattaaggtcatcagtgggctcctcttc 521  Q
    |||||||||||||||||| ||| | ||||||||||||||| |||||    
T  5334498 ttttcttctttctgttctcattgaagtcatcagtgggctcatcttc 5334453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 545 - 625
Target Start/End: Original strand, 23127306 - 23127386
Alignment:
Q  545 gttcatcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    ||||||||||||| |||||||||  ||| || ||||||| | || ||||||| ||||| | ||| ||||||| ||||||||    
T  23127306 gttcatcatatacaagataaactgttgtattcttcacaacgaaaccattctcaaaaacgacaacaacctccattttgttac 23127386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 298 - 412
Target Start/End: Original strand, 47985062 - 47985177
Alignment:
Q  298 atgacatggaacaattgtaacagaacaaattagaatctttcaccactctttgtgaata-aaaaattcaacatggataaaatcaagaaactacagccaaaa 396  Q
    ||||| ||||| |||||||||| ||||||||  |||||||||||  |||||  || || ||||||| | |||| |||||||| ||||||| |||||||||    
T  47985062 atgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaa 47985161  T
Q  397 atggaaaacaattgtt 412  Q
     |||||||||||||||    
T  47985162 ttggaaaacaattgtt 47985177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 298 - 412
Target Start/End: Original strand, 47994349 - 47994464
Alignment:
Q  298 atgacatggaacaattgtaacagaacaaattagaatctttcaccactctttgtgaata-aaaaattcaacatggataaaatcaagaaactacagccaaaa 396  Q
    ||||| ||||| |||||||||| ||||||||  |||||||||||  |||||  || || ||||||| | |||| |||||||| ||||||| |||||||||    
T  47994349 atgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaa 47994448  T
Q  397 atggaaaacaattgtt 412  Q
     |||||||||||||||    
T  47994449 ttggaaaacaattgtt 47994464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 298 - 412
Target Start/End: Original strand, 48003636 - 48003751
Alignment:
Q  298 atgacatggaacaattgtaacagaacaaattagaatctttcaccactctttgtgaata-aaaaattcaacatggataaaatcaagaaactacagccaaaa 396  Q
    ||||| ||||| |||||||||| ||||||||  |||||||||||  |||||  || || ||||||| | |||| |||||||| ||||||| |||||||||    
T  48003636 atgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaa 48003735  T
Q  397 atggaaaacaattgtt 412  Q
     |||||||||||||||    
T  48003736 ttggaaaacaattgtt 48003751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 298 - 412
Target Start/End: Original strand, 48012921 - 48013036
Alignment:
Q  298 atgacatggaacaattgtaacagaacaaattagaatctttcaccactctttgtgaata-aaaaattcaacatggataaaatcaagaaactacagccaaaa 396  Q
    ||||| ||||| |||||||||| ||||||||  |||||||||||  |||||  || || ||||||| | |||| |||||||| ||||||| |||||||||    
T  48012921 atgacgtggaagaattgtaacataacaaattgtaatctttcacctatctttaggattacaaaaatttaccatgaataaaatctagaaacttcagccaaaa 48013020  T
Q  397 atggaaaacaattgtt 412  Q
     |||||||||||||||    
T  48013021 ttggaaaacaattgtt 48013036  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 625
Target Start/End: Original strand, 47985393 - 47985469
Alignment:
Q  549 atcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    ||||||||| ||||||||| || || | ||||||||| || ||||||| ||||||| ||| ||||||||||||||||    
T  47985393 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttac 47985469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 625
Target Start/End: Original strand, 47994680 - 47994756
Alignment:
Q  549 atcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    ||||||||| ||||||||| || || | ||||||||| || ||||||| ||||||| ||| ||||||||||||||||    
T  47994680 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttac 47994756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 625
Target Start/End: Original strand, 48003967 - 48004043
Alignment:
Q  549 atcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    ||||||||| ||||||||| || || | ||||||||| || ||||||| ||||||| ||| ||||||||||||||||    
T  48003967 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttac 48004043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 549 - 625
Target Start/End: Original strand, 48013252 - 48013328
Alignment:
Q  549 atcatatacgagataaactactgtctttttcacaatgcaatcattctcgaaaacaaaaacgacctccactttgttac 625  Q
    ||||||||| ||||||||| || || | ||||||||| || ||||||| ||||||| ||| ||||||||||||||||    
T  48013252 atcatatacaagataaactgctatcctcttcacaatgaaaccattctcaaaaacaacaaccacctccactttgttac 48013328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 529
Target Start/End: Original strand, 47985230 - 47985298
Alignment:
Q  461 ttcaatccactcagtttttcttctttctgttctgattaaggtcatcagtgggctcctcttcagtagaga 529  Q
    |||| |||||||  ||||||||||||||  ||||||| | ||||||  ||| |||||||||||||||||    
T  47985230 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 47985298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 529
Target Start/End: Original strand, 47994517 - 47994585
Alignment:
Q  461 ttcaatccactcagtttttcttctttctgttctgattaaggtcatcagtgggctcctcttcagtagaga 529  Q
    |||| |||||||  ||||||||||||||  ||||||| | ||||||  ||| |||||||||||||||||    
T  47994517 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 47994585  T

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Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 529
Target Start/End: Original strand, 48003804 - 48003872
Alignment:
Q  461 ttcaatccactcagtttttcttctttctgttctgattaaggtcatcagtgggctcctcttcagtagaga 529  Q
    |||| |||||||  ||||||||||||||  ||||||| | ||||||  ||| |||||||||||||||||    
T  48003804 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 48003872  T

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Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 461 - 529
Target Start/End: Original strand, 48013089 - 48013157
Alignment:
Q  461 ttcaatccactcagtttttcttctttctgttctgattaaggtcatcagtgggctcctcttcagtagaga 529  Q
    |||| |||||||  ||||||||||||||  ||||||| | ||||||  ||| |||||||||||||||||    
T  48013089 ttcattccactcgttttttcttctttctagtctgattgaagtcatcgatggactcctcttcagtagaga 48013157  T

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Target: scaffold1476 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: scaffold1476
Description:

Target: scaffold1476; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 427 - 464
Target Start/End: Complemental strand, 228 - 191
Alignment:
Q  427 aattgatttttgctccgccattgctttactatctttca 464  Q
    ||||||||||||||||||||||| ||||| ||||||||    
T  228 aattgatttttgctccgccattgttttaccatctttca 191  T

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