View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF16068_low_90 (Length: 238)
Name: NF16068_low_90
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_90 |
 | |
|
| [»] chr7 (2 HSPs) |
| |
|
Alignment Details
Target: chr7 (Bit Score: 206; Significance: 1e-113; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 17 - 238
Target Start/End: Original strand, 24990662 - 24990883
Alignment:
| Q |
17 |
aagtgacaaattcatttgcagataatcagagaaatgactgatggaggtgtagactgtagttttgaatgtaccggaaatttgaacgttctaagagatagct |
116 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24990662 |
aagtgacaaattcatttgcagataatcagagaaatgactgatggaggtgtagactatagttttgaatgtaccggaaatttgaacgttctaagagatagct |
24990761 |
T |
|
| Q |
117 |
tcttatctgttcatgaggtatatttatattcatacagtaacaaaaaattaccagtaatttcgttggcatagttttatatttttctttgaaaactcggtat |
216 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |||| |||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
24990762 |
tcttatctgttcatgaggtatatttatattcatatagtagcaaaaaattaccagtaattttgttggcatagttttatatttttctttgaaaactcggtat |
24990861 |
T |
|
| Q |
217 |
ttggtcaaagaataaagctaat |
238 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
24990862 |
ttggtcaaagaataaagctaat |
24990883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 28 - 140
Target Start/End: Original strand, 24994459 - 24994571
Alignment:
| Q |
28 |
tcatttgcagataatcagagaaatgactgatggaggtgtagactgtagttttgaatgtaccggaaatttgaacgttctaagagatagcttcttatctgtt |
127 |
Q |
| |
|
||||||||||| ||||||||||||||||| ||||||||| ||| ||||||||||| || |||||| |||||||| |||| ||| |||||| || | |
|
|
| T |
24994459 |
tcatttgcagaaaatcagagaaatgactggaggaggtgtacactacagttttgaatgcacaggaaatgtgaacgttttaagggattccttcttgtcctgt |
24994558 |
T |
|
| Q |
128 |
catgaggtatatt |
140 |
Q |
| |
|
||||||||||||| |
|
|
| T |
24994559 |
catgaggtatatt |
24994571 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University