View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF16068_low_92 (Length: 237)

Name: NF16068_low_92
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF16068_low_92
NF16068_low_92
[»] chr8 (21 HSPs)
chr8 (1-225)||(32665826-32666050)
chr8 (1-225)||(9081083-9081306)
chr8 (15-134)||(9710217-9710336)
chr8 (15-137)||(34687752-34687874)
chr8 (15-142)||(18548531-18548658)
chr8 (1-115)||(7644799-7644914)
chr8 (15-134)||(34439516-34439635)
chr8 (23-134)||(18935054-18935165)
chr8 (15-115)||(7645076-7645176)
chr8 (16-131)||(18935342-18935457)
chr8 (15-137)||(7535546-7535668)
chr8 (17-114)||(25879588-25879685)
chr8 (23-142)||(16049780-16049897)
chr8 (15-79)||(18429616-18429680)
chr8 (66-134)||(21445986-21446054)
chr8 (22-118)||(34439239-34439335)
chr8 (23-134)||(4623070-4623181)
chr8 (1-134)||(16049481-16049615)
chr8 (73-134)||(7535301-7535362)
chr8 (28-134)||(4623406-4623512)
chr8 (23-76)||(25879855-25879908)
[»] chr2 (18 HSPs)
chr2 (1-225)||(6412374-6412598)
chr2 (15-118)||(13490191-13490294)
chr2 (1-115)||(15988527-15988641)
chr2 (17-134)||(27956726-27956843)
chr2 (15-115)||(29526886-29526986)
chr2 (15-142)||(32622481-32622608)
chr2 (25-115)||(13140310-13140400)
chr2 (15-132)||(26845473-26845591)
chr2 (15-137)||(24284092-24284214)
chr2 (23-136)||(6795472-6795585)
chr2 (15-115)||(14473822-14473922)
chr2 (52-134)||(39060309-39060391)
chr2 (23-115)||(1352852-1352944)
chr2 (67-135)||(1353147-1353215)
chr2 (185-225)||(33203135-33203175)
chr2 (15-115)||(44995352-44995452)
chr2 (15-118)||(27957013-27957116)
chr2 (64-134)||(14473507-14473577)
[»] chr4 (30 HSPs)
chr4 (1-142)||(4416755-4416897)
chr4 (15-132)||(4592648-4592765)
chr4 (15-134)||(11306546-11306665)
chr4 (15-134)||(45505352-45505471)
chr4 (23-134)||(48845713-48845824)
chr4 (15-134)||(49983794-49983913)
chr4 (15-134)||(37724440-37724559)
chr4 (15-134)||(43913395-43913514)
chr4 (16-134)||(17524497-17524615)
chr4 (15-115)||(18414742-18414842)
chr4 (15-134)||(49984091-49984210)
chr4 (1-83)||(20870879-20870962)
chr4 (15-134)||(48846006-48846125)
chr4 (1-134)||(17524205-17524339)
chr4 (22-111)||(48658332-48658421)
chr4 (31-115)||(54702298-54702383)
chr4 (15-115)||(18414979-18415079)
chr4 (15-79)||(46397362-46397426)
chr4 (15-134)||(4416477-4416596)
chr4 (29-116)||(12714769-12714856)
chr4 (15-118)||(16399208-16399311)
chr4 (15-137)||(20269157-20269279)
chr4 (22-134)||(31141680-31141792)
chr4 (23-134)||(52485642-52485754)
chr4 (32-115)||(12292909-12292992)
chr4 (67-134)||(37724740-37724807)
chr4 (59-134)||(45170852-45170927)
chr4 (17-115)||(36752879-36752977)
chr4 (15-69)||(45170837-45170891)
chr4 (59-135)||(52485342-52485418)
[»] chr1 (27 HSPs)
chr1 (15-134)||(35795609-35795728)
chr1 (15-115)||(143106-143206)
chr1 (15-115)||(34518247-34518347)
chr1 (15-134)||(48171729-48171848)
chr1 (1-134)||(19987335-19987469)
chr1 (1-137)||(22792555-22792692)
chr1 (15-115)||(37245657-37245757)
chr1 (1-134)||(8718474-8718608)
chr1 (15-137)||(34517962-34518084)
chr1 (15-134)||(42604922-42605041)
chr1 (23-137)||(3072976-3073090)
chr1 (15-115)||(31872892-31872991)
chr1 (37-137)||(33460200-33460300)
chr1 (15-134)||(22792291-22792410)
chr1 (15-134)||(42604631-42604750)
chr1 (16-114)||(19987627-19987725)
chr1 (67-137)||(31872706-31872776)
chr1 (14-111)||(13189177-13189274)
chr1 (17-134)||(35795314-35795431)
chr1 (38-134)||(142812-142908)
chr1 (31-115)||(18519337-18519421)
chr1 (23-115)||(33459915-33460007)
chr1 (68-115)||(14419840-14419887)
chr1 (88-134)||(8718408-8718454)
chr1 (52-134)||(48171443-48171525)
chr1 (23-134)||(6043449-6043557)
chr1 (67-135)||(18519634-18519702)
[»] chr6 (17 HSPs)
chr6 (15-137)||(32629061-32629183)
chr6 (17-134)||(34829850-34829967)
chr6 (15-115)||(10567483-10567583)
chr6 (35-115)||(22793321-22793401)
chr6 (17-111)||(32629345-32629439)
chr6 (22-134)||(6611937-6612049)
chr6 (67-134)||(22793612-22793679)
chr6 (65-135)||(6210292-6210362)
chr6 (1-110)||(6611636-6611746)
chr6 (189-225)||(2341581-2341617)
chr6 (15-113)||(17342910-17343008)
chr6 (1-69)||(28613232-28613301)
chr6 (22-83)||(29674929-29674990)
chr6 (15-79)||(10567754-10567818)
chr6 (67-115)||(11122245-11122293)
chr6 (59-115)||(28613215-28613271)
chr6 (27-115)||(29674868-29674956)
[»] chr5 (8 HSPs)
chr5 (15-134)||(33992628-33992747)
chr5 (15-137)||(25508097-25508219)
chr5 (16-134)||(19935435-19935552)
chr5 (22-134)||(33992336-33992448)
chr5 (15-98)||(34065285-34065368)
chr5 (67-137)||(16643061-16643131)
chr5 (65-137)||(19328406-19328478)
chr5 (21-53)||(41563800-41563832)
[»] chr3 (10 HSPs)
chr3 (15-115)||(51388051-51388151)
chr3 (15-137)||(54341201-54341323)
chr3 (22-134)||(33241847-33241959)
chr3 (15-115)||(48618500-48618600)
chr3 (15-108)||(19540851-19540944)
chr3 (15-134)||(33419834-33419953)
chr3 (15-113)||(37285840-37285938)
chr3 (15-78)||(33419597-33419660)
chr3 (27-118)||(30547756-30547846)
chr3 (27-69)||(33419577-33419619)
[»] scaffold0548 (1 HSPs)
scaffold0548 (15-134)||(3324-3443)
[»] scaffold0056 (2 HSPs)
scaffold0056 (15-134)||(63016-63135)
scaffold0056 (15-79)||(62782-62846)
[»] chr7 (15 HSPs)
chr7 (15-137)||(24185667-24185788)
chr7 (22-114)||(6376387-6376479)
chr7 (1-136)||(48462070-48462207)
chr7 (66-142)||(10017937-10018013)
chr7 (1-134)||(34535695-34535826)
chr7 (23-134)||(36469835-36469945)
chr7 (15-118)||(48461809-48461912)
chr7 (15-136)||(34535976-34536097)
chr7 (15-134)||(22566304-22566421)
chr7 (22-134)||(43510881-43510992)
chr7 (15-78)||(8560686-8560749)
chr7 (59-118)||(17813993-17814052)
chr7 (65-114)||(6376702-6376751)
chr7 (22-115)||(7460591-7460684)
chr7 (59-135)||(7460878-7460954)
[»] scaffold0400 (2 HSPs)
scaffold0400 (67-134)||(9917-9984)
scaffold0400 (52-118)||(9596-9662)
[»] scaffold0365 (2 HSPs)
scaffold0365 (67-134)||(10560-10627)
scaffold0365 (52-118)||(10239-10305)
[»] scaffold0015 (1 HSPs)
scaffold0015 (67-134)||(47420-47487)


Alignment Details
Target: chr8 (Bit Score: 161; Significance: 5e-86; HSPs: 21)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 161; E-Value: 5e-86
Query Start/End: Original strand, 1 - 225
Target Start/End: Original strand, 32665826 - 32666050
Alignment:
Q  1 aacttattccaatcgagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  32665826 aacttattccaatcgagtaaagttttggaccaacttaaaactcttaaaacataagggtccaatttaaaacttttaaat-gtaaaggtccaacttaaaacc 32665924  T
Q  101 tgaaataaacataagagaccgcacatgcaattaaacccaaaacttataatatttagagtttgaattagttcatgat-nnnnnnncttataatattttagt 199  Q
    |||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||| |||||||        ||||||||||||||||    
T  32665925 tgaaataaacataagagaccgcacatgcaattaagccaaaaaattataatatttagagtttgaactagctcatgataaaaaaaacttataatattttagt 32666024  T
Q  200 tagtatttgtccctccctctaatttt 225  Q
    ||||||||||||||||||||||||||    
T  32666025 tagtatttgtccctccctctaatttt 32666050  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 9081306 - 9081083
Alignment:
Q  1 aacttattccaatcgagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacc 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||| |||||||||||||||||| |||||||||||| ||||||||    
T  9081306 aacttattccaatcgagtaaagttttgaaccaacttaaaactcttaaaacataagggtc-aatttaaaacttttaaaatgtaaaggtccaatttaaaacc 9081208  T
Q  101 tgaaataaacataagagaccgcacatgcaattaaacccaaaacttataatatttagagtttgaattagttcatgat-nnnnnnncttataatattttagt 199  Q
    |||||| ||||||| ||||  ||||||||||| || ||||||||||||||||| |||||||||| ||| |||||||        ||||||||||||||||    
T  9081207 tgaaatgaacataaaagacttcacatgcaatt-aagccaaaacttataatattcagagtttgaactagctcatgataaaaaaaacttataatattttagt 9081109  T
Q  200 tagtatttgtccctccctctaatttt 225  Q
    |||||||||||| |||||||||||||    
T  9081108 tagtatttgtccgtccctctaatttt 9081083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 9710336 - 9710217
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||||| ||||||| |||||| |||| || ||||||||||||| ||| || ||||||||||| || ||||||||||||    
T  9710336 gagtaacgttttggaccaacttgaaacttttaaaatgtaagggaccaacttgaaacttttaaaacataagggaccaacttaaaaactaaaataaacataa 9710237  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | || |  ||||||||||||    
T  9710236 gggatcaaacatgcaattaa 9710217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 34687874 - 34687752
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||||| |||||| ||||||| |||| || ||| ||||||||| |||||  |||||||||||||| ||||||||||||    
T  34687874 gagtaacgttttggaccaacttgaaacttttaaaacataagggaccaacttgaaatttttaaaacataaagaaccaacttaaaacctaaaataaacataa 34687775  T
Q  115 gagaccgcacatgcaattaaacc 137  Q
    | |  |  |||||||||||||||    
T  34687774 ggggtcaaacatgcaattaaacc 34687752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 142
Target Start/End: Complemental strand, 18548658 - 18548531
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||||||||  ||||||  ||||   |||| |||||||||||||||| |||||  |||||||||||||| ||||||||||||    
T  18548658 gagtaatgttttggaccaacttaaaacctttaaaacgtaagaaaccaacttaaaacttttaaaacataaagtaccaacttaaaacctaaaataaacataa 18548559  T
Q  115 gagaccgcacatgcaattaaacccaaaa 142  Q
    |  | |  ||||||||||||||| ||||    
T  18548558 ggaatcaaacatgcaattaaacctaaaa 18548531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 7644914 - 7644799
Alignment:
Q  1 aacttattccaatc-gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaac 99  Q
    |||||||||||||| |||||| |||| |||||||||||||| | ||||||  ||||||  ||| || ||||||||||||| ||| || |||||||||||     
T  7644914 aacttattccaatctgagtaatgtttcggaccaacttaaaatttttaaaacgtaagggatcaacttgaaacttttaaaacataagggaccaacttaaaaa 7644815  T
Q  100 ctgaaataaacataag 115  Q
    || |||||||||||||    
T  7644814 ctaaaataaacataag 7644799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 34439516 - 34439635
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||||| ||||||  |||||| |||| || ||||||||||||| | |||| |||| |||||| || ||||||||||||    
T  34439516 gagtaacgttttggaccaactttaaacttttaaaacgtaagggaccaacttgaaacttttaaaacatgaaggaccaatttaaaaactaaaataaacataa 34439615  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | || |  ||||||||||||    
T  34439616 gggatcaaacatgcaattaa 34439635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 18935165 - 18935054
Alignment:
Q  23 ttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgc 122  Q
    ||||| ||||| || ||||| ||| || ||||||| |||| |||||| |||||||||  || || |||||||||||| | ||||||||||||||||||      
T  18935165 ttttgaaccaatttgaaacttttataacataagggaccaacttaaaagttttaaaacaaaagggaccaacttaaaacttaaaataaacataagagaccaa 18935066  T
Q  123 acatgcaattaa 134  Q
    ||||||||||||    
T  18935065 acatgcaattaa 18935054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 7645076 - 7645176
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||||| |||||| ||||| ||||||| ||||||  ||| || ||||||||||||  |||||| | ||||||||| || ||||||||||||    
T  7645076 gagtaacgttttggatcaacttgaaacttttaaaatgtaagggatcaacttgaaacttttaaaatataaaggactaacttaaaaactaaaataaacataa 7645175  T
Q  115 g 115  Q
    |    
T  7645176 g 7645176  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 16 - 131
Target Start/End: Original strand, 18935342 - 18935457
Alignment:
Q  16 agtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataag 115  Q
    ||||| |||| |||||||||| ||||| |||||| | ||| | |||| || ||||||||||||| ||| || ||||| | |||||| |||||||||||||    
T  18935342 agtaacgtttgggaccaacttgaaacttttaaaacacaagagaccaacttgaaacttttaaaacataagggaccaacatgaaacctaaaataaacataag 18935441  T
Q  116 agaccgcacatgcaat 131  Q
     ||||  |||||||||    
T  18935442 ggaccaaacatgcaat 18935457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 7535546 - 7535668
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||||||||   |||||| |||||| |||| || || |||||||||| ||| || ||||||| |||||  ||||||| ||||    
T  7535546 gagtaacgttttggaccaacttaaaacctgtaaaatgtaagggaccaacttgaatcttttaaaacataaggggccaacttgaaaccaaaaataaatataa 7535645  T
Q  115 gagaccgcacatgcaattaaacc 137  Q
    |  | |  |||||||||||||||    
T  7535646 ggaatcaaacatgcaattaaacc 7535668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 17 - 114
Target Start/End: Complemental strand, 25879685 - 25879588
Alignment:
Q  17 gtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||| |||||| || ||||| ||||| ||||||  |||| | ||||||||||||||||||||| ||| || ||||||||||| |  ||||||||||||    
T  25879685 gtaacgttttgaactaacttgaaactattaaaacgtaagtgaccaatttaaaacttttaaaacataatggaccaacttaaaaacaaaaataaacataa 25879588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 23 - 142
Target Start/End: Original strand, 16049780 - 16049897
Alignment:
Q  23 ttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgc 122  Q
    |||||||||||||| ||||| ||||||  ||||    ||| |||||||||||||||| ||| || ||||||| ||| || ||||||||||||| || |      
T  16049780 ttttggaccaacttgaaacttttaaaacgtaagat--caacttaaaacttttaaaacataagggaccaacttgaaaactaaaataaacataagggatcaa 16049877  T
Q  123 acatgcaattaaacccaaaa 142  Q
    ||||||||||||||| ||||    
T  16049878 acatgcaattaaacctaaaa 16049897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 18429616 - 18429680
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaac 79  Q
    |||||| ||||||||||||||||||||| ||||||  |||||| |||| || |||||||||||||    
T  18429616 gagtaacgttttggaccaacttaaaacttttaaaacgtaagggaccaactttaaacttttaaaac 18429680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 66 - 134
Target Start/End: Complemental strand, 21446054 - 21445986
Alignment:
Q  66 aaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaa 134  Q
    |||||||||||||||||| || ||||||||||| || ||||||| ||||| ||||  ||||||||||||    
T  21446054 aaaacttttaaaacgtaagggaccaacttaaaatctaaaataaatataagggaccaaacatgcaattaa 21445986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 118
Target Start/End: Complemental strand, 34439335 - 34439239
Alignment:
Q  22 gttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagaga 118  Q
    ||||||||||||||| || || ||||||  |||||| |||| || || |||||||||| ||| |  ||||||||||| || ||||||||||||||||    
T  34439335 gttttggaccaacttgaatcttttaaaacgtaagggaccaacttgaatcttttaaaacctaacgaaccaacttaaaaactaaaataaacataagaga 34439239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 4623181 - 4623070
Alignment:
Q  23 ttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgc 122  Q
    |||||||||||||| ||||  ||||||  |||| | |||| |||||||||||||||| ||| ||  ||| |||||| || ||||||||||||| || |      
T  4623181 ttttggaccaacttgaaacctttaaaacgtaagagaccaacttaaaacttttaaaacataagggatcaatttaaaaactaaaataaacataagggatcaa 4623082  T
Q  123 acatgcaattaa 134  Q
    ||||||||||||    
T  4623081 acatgcaattaa 4623070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 16049615 - 16049481
Alignment:
Q  1 aacttattccaatc-gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaac 99  Q
    |||||||||||||  | |||| ||||||||||||||| ||| | ||||||   ||||| |||| |||||||||||||||| ||| |  |||| ||||||     
T  16049615 aacttattccaatgtgggtaacgttttggaccaacttgaaatttttaaaacgaaagggaccaacttaaaacttttaaaacataaggaaccaaattaaaaa 16049516  T
Q  100 ctgaaataaacataagagaccgcacatgcaattaa 134  Q
    |  ||||||||||| | || || ||||||||||||    
T  16049515 ccaaaataaacatacgggatcgaacatgcaattaa 16049481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 73 - 134
Target Start/End: Complemental strand, 7535362 - 7535301
Alignment:
Q  73 ttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaa 134  Q
    ||||||| |||| | |||||||||||| | ||||||||||||||||||  ||||||||||||    
T  7535362 ttaaaacataaaagaccaacttaaaacgtaaaataaacataagagaccaaacatgcaattaa 7535301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 28 - 134
Target Start/End: Original strand, 4623406 - 4623512
Alignment:
Q  28 gaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatg 127  Q
    ||||||||| ||||| |||||| ||||| | | |  || ||||||||||||| ||||||  |||||| ||| || ||||||||||||| || |  |||||    
T  4623406 gaccaacttgaaacttttaaaacataagtgactatcttgaaacttttaaaacataaaggatcaacttgaaaactaaaataaacataagggatcaaacatg 4623505  T
Q  128 caattaa 134  Q
    |||||||    
T  4623506 caattaa 4623512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 76
Target Start/End: Original strand, 25879855 - 25879908
Alignment:
Q  23 ttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaa 76  Q
    ||||| |||||||| ||||| |||||||||||||| |||| || ||||||||||    
T  25879855 ttttgaaccaacttgaaacttttaaaatataagggaccaacttgaaacttttaa 25879908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 153; Significance: 3e-81; HSPs: 18)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 6412598 - 6412374
Alignment:
Q  1 aacttattccaatcgagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacc 100  Q
    |||||||||||||||| ||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||  |||||||||||||||||||||    
T  6412598 aacttattccaatcgactaaagttttggaccaacttgaaactcttaaaacataagggtccaatttaaaacttttaaat-gtaaaggtccaacttaaaacc 6412500  T
Q  101 tgaaataaacataagagaccgcacatgcaattaaacccaaaacttataatatttagagtttgaattagttcatgat-nnnnnnncttataatattttagt 199  Q
    |||||||||||||||||||||||||||||||||| || |||| ||||||||||||||||||||| ||| |||||||        ||||||||||||||||    
T  6412499 tgaaataaacataagagaccgcacatgcaattaagccaaaaaattataatatttagagtttgaactagctcatgataaaaaaaacttataatattttagt 6412400  T
Q  200 tagtatttgtccctccctctaatttt 225  Q
    ||||||||||||||||||||||||||    
T  6412399 tagtatttgtccctccctctaatttt 6412374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 13490294 - 13490191
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||||||||| ||||||  |||| | |||| |||||||||||||||| ||||||  |||||||||| || || |||||||||    
T  13490294 gagtaacgttttggaccaacttaaaacttttaaaacgtaagagaccaacttaaaacttttaaaacataaaggatcaacttaaaaactaaagtaaacataa 13490195  T
Q  115 gaga 118  Q
    ||||    
T  13490194 gaga 13490191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 15988527 - 15988641
Alignment:
Q  1 aacttattccaatc-gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaac 99  Q
    |||||||||||||  |||||| ||||||||||||||||||||| |||||||||||||| |||| || ||||||||||||| | |||| ||||| | ||||    
T  15988527 aacttattccaatgtgagtaatgttttggaccaacttaaaacttttaaaatataagggaccaacttgaaacttttaaaacat-aaggaccaacatgaaac 15988625  T
Q  100 ctgaaataaacataag 115  Q
    |  |||||||||||||    
T  15988626 cgaaaataaacataag 15988641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 27956843 - 27956726
Alignment:
Q  17 gtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataaga 116  Q
    |||| ||||||||||||||| ||||| ||||||  |||||| ||||||||||||||||||||| | |||| || | |||||| || |||||||||||||     
T  27956843 gtaatgttttggaccaacttgaaacttttaaaacgtaagggaccaatttaaaacttttaaaacatgaaggacctatttaaaaactaaaataaacataagg 27956744  T
Q  117 gaccgcacatgcaattaa 134  Q
    || |  ||||||||||||    
T  27956743 gatcaaacatgcaattaa 27956726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 29526886 - 29526986
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||||| ||||||  |||||| |||| |||||||||||||||| ||| || |||||||||||  | ||||||||||||    
T  29526886 gagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttaaaacttttaaaacataatggaccaacttaaaaattaaaataaacataa 29526985  T
Q  115 g 115  Q
    |    
T  29526986 g 29526986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 142
Target Start/End: Original strand, 32622481 - 32622608
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||||||||| |||| |  |||  | |||| || ||||||||||||| | |||| ||||||||||| || ||||||||||||    
T  32622481 gagtaacgttttggaccaacttaaaacttttaatacgtaaaagaccaacttcaaacttttaaaacatgaaggaccaacttaaaaactaaaataaacataa 32622580  T
Q  115 gagaccgcacatgcaattaaacccaaaa 142  Q
    | || |  ||||||||||||||| ||||    
T  32622581 gggatcaaacatgcaattaaacctaaaa 32622608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 25 - 115
Target Start/End: Complemental strand, 13140400 - 13140310
Alignment:
Q  25 ttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataag 115  Q
    |||||||||||| ||||  ||||||  |||| | |||| |||||||||||||||| |||| | |||||||||||||| |||||||||||||    
T  13140400 ttggaccaacttgaaacctttaaaacgtaagtgaccaacttaaaacttttaaaacataaaagaccaacttaaaacctaaaataaacataag 13140310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 26845473 - 26845591
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaat-ataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacata 113  Q
    |||||| |||||| |||||| | ||||| ||||||  |||| || |||| || ||||||||||||| ||| || |||||||||||||| |||||||||||    
T  26845473 gagtaacgttttgaaccaacatgaaactgttaaaaacataaaggaccaacttgaaacttttaaaacataagggaccaacttaaaacctaaaataaacata 26845572  T
Q  114 agagaccgcacatgcaatt 132  Q
    || ||||  ||||||||||    
T  26845573 agggaccaaacatgcaatt 26845591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 24284092 - 24284214
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||||  |||||| ||||| |||||||||||| ||| || |||||||||||||||| ||| || |||| ||  ||||| |||||||||| |    
T  24284092 gagtaatgttttgggtcaacttgaaacttttaaaatataagagtcaaacttaaaacttttaaaacataagggaccaatttgtaacctaaaataaacatga 24284191  T
Q  115 gagaccgcacatgcaattaaacc 137  Q
    | | |   |||||||||||||||    
T  24284192 ggggctaaacatgcaattaaacc 24284214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 23 - 136
Target Start/End: Original strand, 6795472 - 6795585
Alignment:
Q  23 ttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgc 122  Q
    ||||| |||||||| ||||| ||||||  | |||| |||| || ||||||||||||| ||| || |||||||||||||| ||||||| ||| | || |      
T  6795472 ttttgaaccaactttaaacttttaaaacgttagggaccaactttaaacttttaaaacataatggaccaacttaaaacctaaaataaatataggggatcaa 6795571  T
Q  123 acatgcaattaaac 136  Q
    ||||||||||||||    
T  6795572 acatgcaattaaac 6795585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 14473822 - 14473922
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||||||| |||| | |||   |||| |||||||||||||||| ||| || || |||| |||||| |||||||| |||    
T  14473822 gagtaacgttttggaccaacttgaaactctcaaaacaaaagacaccaacttaaaacttttaaaacataagggacctacttgaaacctaaaataaacgtaa 14473921  T
Q  115 g 115  Q
    |    
T  14473922 g 14473922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 39060391 - 39060309
Alignment:
Q  52 taagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaa 134  Q
    |||||| |||| |||||||||||||||| | | || ||||||||||| || ||||||||||||| || |  ||||||||||||    
T  39060391 taagggaccaacttaaaacttttaaaacattagggaccaacttaaaaactaaaataaacataagggatcaaacatgcaattaa 39060309  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 1352944 - 1352852
Alignment:
Q  23 ttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataag 115  Q
    |||| ||||||||||||||| ||||||| |||| | |||| |||||| || |||||   || || |||| ||||||||| |||||||||||||    
T  1352944 ttttagaccaacttaaaacttttaaaatgtaagagaccaacttaaaatttgtaaaatacaagggaccaatttaaaacctaaaataaacataag 1352852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 1353147 - 1353215
Alignment:
Q  67 aaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaaa 135  Q
    ||||||||||||| |||  | |||||||||||||| |||||||||| |||||||  |||| ||||||||    
T  1353147 aaacttttaaaacataagagaccaacttaaaacctaaaataaacatgagagaccaaacatacaattaaa 1353215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 185 - 225
Target Start/End: Complemental strand, 33203175 - 33203135
Alignment:
Q  185 ttataatattttagttagtatttgtccctccctctaatttt 225  Q
    |||||||||||| ||||||||||||| ||||||||||||||    
T  33203175 ttataatattttggttagtatttgtcgctccctctaatttt 33203135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 44995352 - 44995452
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| | ||| ||||||  |||||| |||| || ||||||||||||  | |||  ||||||||||| || |||||||| |||    
T  44995352 gagtaacgttttggaccaacttgatacttttaaaacgtaagggaccaacttgaaacttttaaaatatgaagtaccaacttaaaaactaaaataaacgtaa 44995451  T
Q  115 g 115  Q
    |    
T  44995452 g 44995452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 27957013 - 27957116
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||||  |||||   ||| || |||| |||||||||||||||  |||  | || |||| |||||| ||||||||||||    
T  27957013 gagtaacgttttggaccaacttgaaacatttaaagcgtaacggaccaagttaaaacttttaaaatataagagacctacttgaaacctaaaataaacataa 27957112  T
Q  115 gaga 118  Q
    ||||    
T  27957113 gaga 27957116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 64 - 134
Target Start/End: Complemental strand, 14473577 - 14473507
Alignment:
Q  64 ttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaa 134  Q
    |||||||||||||||| ||| || |||||| ||||| | ||||||||| ||| ||||  ||||||||||||    
T  14473577 ttaaaacttttaaaacataagggaccaactcaaaacttaaaataaacaaaagcgaccaaacatgcaattaa 14473507  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 71; Significance: 3e-32; HSPs: 30)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 1 - 142
Target Start/End: Original strand, 4416755 - 4416897
Alignment:
Q  1 aacttattccaatc-gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaac 99  Q
    |||||||||||||  |||||| ||||||||||||||||||||| ||||||| |||||| |||| |||||| ||||||||| ||| || |||||||||||     
T  4416755 aacttattccaatgtgagtaacgttttggaccaacttaaaacttttaaaatgtaagggaccaacttaaaatttttaaaacataagggaccaacttaaaaa 4416854  T
Q  100 ctgaaataaacataagagaccgcacatgcaattaaacccaaaa 142  Q
    || |||||||||||||||| |  ||||||||||||||| ||||    
T  4416855 ctaaaataaacataagagatcaaacatgcaattaaacctaaaa 4416897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 15 - 132
Target Start/End: Original strand, 4592648 - 4592765
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||| |||||||| ||||| |||||| ||||||| |||| |||||||||||||||| |||  | |||||||||||||| ||||||||||||    
T  4592648 gagtaacgttttgaaccaacttgaaactgttaaaacataagggaccaacttaaaacttttaaaacataagagaccaacttaaaacctaaaataaacataa 4592747  T
Q  115 gagaccgcacatgcaatt 132  Q
    | ||||  ||||||||||    
T  4592748 gggaccaaacatgcaatt 4592765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 11306546 - 11306665
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||||| ||||||  |||||| |||| || ||||||||||||| ||| || ||||||| ||| || ||||||||||||    
T  11306546 gagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttgaaacttttaaaacataagggaccaacttgaaaactaaaataaacataa 11306645  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | || |  ||||||||||||    
T  11306646 gggatcaaacatgcaattaa 11306665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 45505352 - 45505471
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||||| ||||||  |||||| |||| || ||||||||||||| ||| || ||||||| ||| || ||||||||||||    
T  45505352 gagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttgaaacttttaaaacataagggaccaacttgaaaactaaaataaacataa 45505451  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | || |  ||||||||||||    
T  45505452 gggatcaaacatgcaattaa 45505471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 48845824 - 48845713
Alignment:
Q  23 ttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgc 122  Q
    |||||||||||||||||| | ||||||  |||||| |||| || ||||||||||||| ||| || |||||||| || || |||||||||||||||| |      
T  48845824 ttttggaccaacttaaaatttttaaaacgtaagggaccaacttgaaacttttaaaacataaggggccaacttataaactaaaataaacataagagatcaa 48845725  T
Q  123 acatgcaattaa 134  Q
    ||||||||||||    
T  48845724 acatgcaattaa 48845713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 49983913 - 49983794
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||| |||||||||||| | |||||| ||||||| |||| || ||||||||||||| |||||| ||||||| ||| || |||||| || ||    
T  49983913 gagtaacgttttgaaccaacttaaaatttttaaaacataagggaccaacttcaaacttttaaaacataaaggaccaacttgaaatctaaaataagcacaa 49983814  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | ||||  ||||||||||||    
T  49983813 gggaccaaacatgcaattaa 49983794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 37724559 - 37724440
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||||||||| || ||| | ||||||| |||||| |||| || ||||||||||| | | |||| |||| |||||| || ||||||||||||    
T  37724559 gagtaacgttttggaccaatttgaaaattttaaaatgtaagggaccaacttgaaacttttaaatcatgaaggaccaatttaaaaactaaaataaacataa 37724460  T
Q  115 gagaccgcacatgcaattaa 134  Q
    |||| |  ||||||||||||    
T  37724459 gagatcatacatgcaattaa 37724440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 43913514 - 43913395
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||||| |||||| ||||| ||||||  |||  | ||||||||||||||||||||  ||| || ||||||||||| || ||||||||||||    
T  43913514 gagtaacgttttggatcaacttgaaacttttaaaacgtaaaagaccaatttaaaacttttaaaatataagggaccaacttaaaaactaaaataaacataa 43913415  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | || |  ||||||||||||    
T  43913414 gggatcaaacatgcaattaa 43913395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 134
Target Start/End: Original strand, 17524497 - 17524615
Alignment:
Q  16 agtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataag 115  Q
    ||||| ||||||| ||||||||||||| |||||| |||||||  ||| || ||||||||||||  |||||  ||||||| ||| || |||||||| ||||    
T  17524497 agtaacgttttggtccaacttaaaacttttaaaacataagggatcaacttgaaacttttaaaaaataaagtaccaacttgaaaactaaaataaacgtaag 17524596  T
Q  116 agaccgcacatgcaattaa 134  Q
    ||| |  ||||||||||||    
T  17524597 agatcaaacatgcaattaa 17524615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 18414842 - 18414742
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||| |||||||| ||| | ||||||| |||||| |||| || ||||||||||||| ||| || |||||||||||  | ||||||||||||    
T  18414842 gagtaacgttttgaaccaacttgaaatttttaaaatgtaagggaccaacttgaaacttttaaaacataagggaccaacttaaaaattaaaataaacataa 18414743  T
Q  115 g 115  Q
    |    
T  18414742 g 18414742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 49984091 - 49984210
Alignment:
Q  15 gagtaaagttttggaccaactt-aaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacata 113  Q
    |||||| ||||||||||||||| |||||| |||||| ||||||| |||| || ||||||||||||| ||| |  ||||| | |||||| |||||||||||    
T  49984091 gagtaacgttttggaccaacttgaaaact-ttaaaacataagggaccaacttgaaacttttaaaacataaggaaccaacatgaaacctaaaataaacata 49984189  T
Q  114 agagaccgcacatgcaattaa 134  Q
    || || |  ||||||||||||    
T  49984190 agggatcaaacatgcaattaa 49984210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 1 - 83
Target Start/End: Complemental strand, 20870962 - 20870879
Alignment:
Q  1 aacttattccaatc-gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaa 83  Q
    |||||||||||||  |||||| ||||||||| ||||| ||||| ||||||  |||||| |||| ||||||||||||||||||||    
T  20870962 aacttattccaatgtgagtaacgttttggacaaacttgaaacttttaaaacgtaagggaccaacttaaaacttttaaaacgtaa 20870879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 48846006 - 48846125
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||| | ||||||| ||||| |||||| ||||||  |||  |||||||||||||||| ||| || |||||||||||  | ||||||||||||    
T  48846006 gagtaacgttttagtccaacttgaaacttttaaaacataaggcaccatcttaaaacttttaaaacataagggaccaacttaaaaagtaaaataaacataa 48846105  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | || |  ||||||||||||    
T  48846106 gggatcaaacatgcaattaa 48846125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 17524339 - 17524205
Alignment:
Q  1 aacttattccaatc-gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaac 99  Q
    |||||||||||||  |||||| |||||||| ||| || ||||| |||||| ||||| |  ||| || ||||||||||||| ||| || ||||||| |||     
T  17524339 aacttattccaatgtgagtaacgttttggatcaatttgaaacttttaaaacataagagatcaacttgaaacttttaaaacataagggaccaacttgaaaa 17524240  T
Q  100 ctgaaataaacataagagaccgcacatgcaattaa 134  Q
    || ||||||||||||| || |  ||||||||||||    
T  17524239 ctaaaataaacataagggatcaaacatgcaattaa 17524205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 22 - 111
Target Start/End: Original strand, 48658332 - 48658421
Alignment:
Q  22 gttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaaca 111  Q
    ||||| ||||||||||||||| ||||||| |||||| |||| |||||||||||||||  | || | |||| |||||| || |||||||||    
T  48658332 gtttttgaccaacttaaaacttttaaaatctaagggaccaacttaaaacttttaaaatatgaatgaccaatttaaaaactaaaataaaca 48658421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 31 - 115
Target Start/End: Original strand, 54702298 - 54702383
Alignment:
Q  31 caacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaagg-tccaacttaaaacctgaaataaacataag 115  Q
    |||||||||||| |||||| ||||||| |||| ||||||||||||||||  || ||  |||||||||||||| |||||| ||||||    
T  54702298 caacttaaaactgttaaaacataagggaccaacttaaaacttttaaaacagaagggaaccaacttaaaacctaaaataatcataag 54702383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 18414979 - 18415079
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||||| ||||||   ||||| |||| || ||||||||||||| | ||||  |||||| ||| || ||||||||||||    
T  18414979 gagtaacgttttggaccaacttgaaacttttaaaacgcaagggaccaacttgaaacttttaaaacatgaaggatcaacttgaaaactaaaataaacataa 18415078  T
Q  115 g 115  Q
    |    
T  18415079 g 18415079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 46397426 - 46397362
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaac 79  Q
    |||||| ||||||||||||||||||||| ||||||  |||||| |||| || |||||||||||||    
T  46397426 gagtaacgttttggaccaacttaaaacttttaaaacgtaagggaccaacttgaaacttttaaaac 46397362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 4416596 - 4416477
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||||| ||||||  ||| || |||| || ||||||||||||| ||| ||  |||||||||| || |||||||  |||    
T  4416596 gagtaacgttttggaccaacttgaaacttttaaaacgtaaaggaccaacttgaaacttttaaaacataagggatcaacttaaaaactaaaataaatgtaa 4416497  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | || |  ||||||||||||    
T  4416496 gggatcaaacatgcaattaa 4416477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 29 - 116
Target Start/End: Complemental strand, 12714856 - 12714769
Alignment:
Q  29 accaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataaga 116  Q
    |||||||||||||| |||||| ||||| |  |||||||||||| ||||| | |||| | |||||||||||  | ||||||||||||||    
T  12714856 accaacttaaaacttttaaaacataagagatcaatttaaaactcttaaaccataaatgaccaacttaaaaattcaaataaacataaga 12714769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 16399208 - 16399311
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||| ||||||| ||||||  ||||||  |||  | |||| |||||| ||||||||| |||||| |||| |||||| || ||||||||||||    
T  16399208 gagtaacgtttttgaccaacataaaacctttaaaacgtaaacgaccaacttaaaaattttaaaacataaaggaccaatttaaaatctaaaataaacataa 16399307  T
Q  115 gaga 118  Q
    ||||    
T  16399308 gaga 16399311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 20269157 - 20269279
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||||  ||||||  ||||||  | | || ||| ||||||||| |||  | |||||||||||| | |||||||||||     
T  20269157 gagtaatgttttggaccaacttgaaacctttaaaacgtaagggaacgactttaaatttttaaaacataagagaccaacttaaaacgtaaaataaacatac 20269256  T
Q  115 gagaccgcacatgcaattaaacc 137  Q
    |||| |  |||||||||||||||    
T  20269257 gagatcaaacatgcaattaaacc 20269279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 31141792 - 31141680
Alignment:
Q  22 gttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccg 121  Q
    ||||||||| || || ||||| |||||| ||||||| | || ||||||  |||||||| |||| | ||||||| |||||| | ||||||||| | ||||     
T  31141792 gttttggacgaatttgaaacttttaaaacataagggactaacttaaaaaatttaaaacataaatgaccaacttgaaacctaagataaacatacgggacca 31141693  T
Q  122 cacatgcaattaa 134  Q
     ||||||||||||    
T  31141692 aacatgcaattaa 31141680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 52485642 - 52485754
Alignment:
Q  23 ttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaactt-aaaacctgaaataaacataagagaccg 121  Q
    ||||||||| |||| ||||| ||||||| |||| | || | |||||||||||||||  ||| || ||||||| |||| || |||||||||||| ||| |     
T  52485642 ttttggaccgacttgaaacttttaaaatgtaagagacccacttaaaacttttaaaatataagggaccaacttaaaaaactaaaataaacataaaagatca 52485741  T
Q  122 cacatgcaattaa 134  Q
     ||||||||||||    
T  52485742 aacatgcaattaa 52485754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 12292992 - 12292909
Alignment:
Q  32 aacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataag 115  Q
    ||||||||| | |||||| ||||||  |||| || |||||||||||||  || || ||||||| |||||| |||||||||||||    
T  12292992 aacttaaaatttttaaaacataaggtaccaacttgaaacttttaaaacaaaagggaccaactttaaacctaaaataaacataag 12292909  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 37724740 - 37724807
Alignment:
Q  67 aaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaa 134  Q
    ||||||||||||| ||| ||  |||||||||| || |||||||||||||||| |  ||||||||||||    
T  37724740 aaacttttaaaacctaagggatcaacttaaaaactaaaataaacataagagatcaaacatgcaattaa 37724807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 134
Target Start/End: Original strand, 45170852 - 45170927
Alignment:
Q  59 ccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaa 134  Q
    |||| |||||||||||||||| | |||| |||| |||||| || ||||||||||||| || |  ||||||||||||    
T  45170852 ccaacttaaaacttttaaaacatgaaggaccaatttaaaaactaaaataaacataagggatcaaacatgcaattaa 45170927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 17 - 115
Target Start/End: Complemental strand, 36752977 - 36752879
Alignment:
Q  17 gtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataag 115  Q
    |||| ||||||||||||||| ||| | ||||||   ||||| |||| || ||||||||||||| | |||| |||| ||||||  | |||||||||||||    
T  36752977 gtaacgttttggaccaacttgaaatttttaaaacgcaagggaccaacttgaaacttttaaaacatgaaggaccaatttaaaaattaaaataaacataag 36752879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 69
Target Start/End: Original strand, 45170837 - 45170891
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaa 69  Q
    |||||| ||||||||||||||||||||| |||||| || | || |||||||||||    
T  45170837 gagtaacgttttggaccaacttaaaacttttaaaacatgaaggaccaatttaaaa 45170891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 135
Target Start/End: Complemental strand, 52485418 - 52485342
Alignment:
Q  59 ccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaaa 135  Q
    |||| |||||||||||||||| ||| ||  |||||||||| || ||||||||||||  || |  |||||||||||||    
T  52485418 ccaacttaaaacttttaaaacataagggatcaacttaaaaactaaaataaacataatggatcaaacatgcaattaaa 52485342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 56; Significance: 2e-23; HSPs: 27)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 35795609 - 35795728
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||| |||||||| ||||| |||||| ||||||| ||||||||||||||||||||| | | || ||||||||||| || ||||||||||||    
T  35795609 gagtaacgttttgaaccaacttgaaacttttaaaacataagggaccaatttaaaacttttaaaacatcagggaccaacttaaaatctaaaataaacataa 35795708  T
Q  115 gagaccgcacatgcaattaa 134  Q
      ||||  ||||||||||||    
T  35795709 aggaccaaacatgcaattaa 35795728  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 143106 - 143206
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||||| ||||||  |||||| |||| |||||||||||||| | || ||| |||||||||||||| ||||||||||||    
T  143106 gagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttaaaacttttaaagcatataggaccaacttaaaacctaaaataaacataa 143205  T
Q  115 g 115  Q
    |    
T  143206 g 143206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 34518247 - 34518347
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||| | ||||||  |||||| ||||||||||||||||||||  |||||| ||||||||||| || ||||||||||||    
T  34518247 gagtaacgttttggaccaacttgaaatttttaaaacgtaagggaccaatttaaaacttttaaaatataaaggaccaacttaaaaactaaaataaacataa 34518346  T
Q  115 g 115  Q
    |    
T  34518347 g 34518347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 48171729 - 48171848
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||| |||||||| ||||| |||||| |||||||  ||  || ||||||||||||| |||||| ||||||| |||||| ||||||||||||    
T  48171729 gagtaacgttttgaaccaacttgaaacttttaaaacataagggaacagcttgaaacttttaaaacataaaggaccaacttgaaacctaaaataaacataa 48171828  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | ||||  ||||||||||||    
T  48171829 gggaccaaacatgcaattaa 48171848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 19987469 - 19987335
Alignment:
Q  1 aacttattccaatc-gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaac 99  Q
    |||||||||||||  |||||| |||||||| |||||| ||||| ||||||  |||||| |||| |||||||||||||||| ||||||  ||||||||||     
T  19987469 aacttattccaatgtgagtaacgttttggatcaacttgaaacttttaaaacttaagggaccaacttaaaacttttaaaacataaaggaacaacttaaaaa 19987370  T
Q  100 ctgaaataaacataagagaccgcacatgcaattaa 134  Q
    || ||||||||||| | || |  ||||||||||||    
T  19987369 ctaaaataaacatatgggatcaaacatgcaattaa 19987335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 137
Target Start/End: Original strand, 22792555 - 22792692
Alignment:
Q  1 aacttattccaatc-gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaac 99  Q
    |||||||||||||  |||||| ||||||||| ||||| ||||  || |||  |||||| |||| |||||||||||||||| ||| || ||||||||||||    
T  22792555 aacttattccaatgtgagtaacgttttggactaacttgaaacctttcaaacgtaagggaccaacttaaaacttttaaaacttaagggaccaacttaaaac 22792654  T
Q  100 ctgaaataaacataagagaccgcacatgcaattaaacc 137  Q
    || ||||||||||| | ||||  |||| ||||||||||    
T  22792655 ctaaaataaacatatgggaccaaacatacaattaaacc 22792692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 37245757 - 37245657
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||||||||| ||||||| ||||||  ||| || ||||||||||||  |||  | ||||||||||| || ||||||||||||    
T  37245757 gagtaacgttttggaccaacttaaaacttttaaaatgtaagggatcaacttgaaacttttaaaatataagagaccaacttaaaaactaaaataaacataa 37245658  T
Q  115 g 115  Q
    |    
T  37245657 g 37245657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 134
Target Start/End: Original strand, 8718474 - 8718608
Alignment:
Q  1 aacttattccaatc-gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaac 99  Q
    |||||||||||||  |||||| |||||| |||||||| ||| | |||||| ||||||| | || || ||||||||||||  ||| || ||||||||||||    
T  8718474 aacttattccaatgtgagtaacgttttgaaccaacttgaaaattttaaaacataagggacaaacttgaaacttttaaaaaataagggaccaacttaaaac 8718573  T
Q  100 ctgaaataaacataagagaccgcacatgcaattaa 134  Q
    || ||||||||||| | || |  ||||||||||||    
T  8718574 ctaaaataaacatatgggatcaaacatgcaattaa 8718608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 34518084 - 34517962
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||| |||||||||||||| ||||||  || ||| || | || ||||| ||||||| ||| || ||||||||||| || ||||||||||||    
T  34518084 gagtaacgttttgaaccaacttaaaacttttaaaacgtaggggaccgagttgaaactgttaaaacataatggaccaacttaaaaactaaaataaacataa 34517985  T
Q  115 gagaccgcacatgcaattaaacc 137  Q
    | || |  |||||||||||||||    
T  34517984 gggatcaaacatgcaattaaacc 34517962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 42604922 - 42605041
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||| ||||||| | ||||| | ||||  |||||| |||| || ||||||||||||| ||| |||||||||| ||| || ||||||||||||    
T  42604922 gagtaacgtttttgaccaacatgaaactttaaaaacgtaagggaccaacttgaaacttttaaaacctaagggtccaacttgaaaactaaaataaacataa 42605021  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | || |  ||||||||||||    
T  42605022 gggatcaaacatgcaattaa 42605041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 23 - 137
Target Start/End: Complemental strand, 3073090 - 3072976
Alignment:
Q  23 ttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgc 122  Q
    |||| ||||||||| ||||| ||||||  |||| | |||| ||||||||||||||||  || || ||||||||||| || ||||||||||||  || |      
T  3073090 ttttagaccaacttgaaacttttaaaacgtaagagaccaacttaaaacttttaaaacacaagggaccaacttaaaatctaaaataaacataaaggatcaa 3072991  T
Q  123 acatgcaattaaacc 137  Q
    |||||||||||||||    
T  3072990 acatgcaattaaacc 3072976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 31872892 - 31872991
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||||| ||||||  |||||| |||| || ||||||||||||| | | || ||||||| ||| || ||||||||||||    
T  31872892 gagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttgaaacttttaaaacat-agggaccaacttgaaaactaaaataaacataa 31872990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 37 - 137
Target Start/End: Original strand, 33460200 - 33460300
Alignment:
Q  37 aaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaaac 136  Q
    |||||| ||||||  ||||||  ||| || ||||||||||||| ||| || ||||||| ||| || |||||||||||||||| |  ||||||||||||||    
T  33460200 aaaacttttaaaacgtaagggatcaacttgaaacttttaaaacataagggaccaacttgaaaactaaaataaacataagagatcaaacatgcaattaaac 33460299  T
Q  137 c 137  Q
    |    
T  33460300 c 33460300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 22792410 - 22792291
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||| | |||| | ||||| |||||| |||| || |||| ||||||||||||||||  || || |||||||||||| | |||||||||||     
T  22792410 gagtaacgttttgaatcaacatgaaacttttaaaacataacggaccaacttaaaacttttaaaacaaaagggaccaacttaaaacttaaaataaacatat 22792311  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | ||||  | ||||||||||    
T  22792310 gggaccaaatatgcaattaa 22792291  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 42604750 - 42604631
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||| ||||||||| ||||| ||||||   ||||| |||| || ||||||||||||  |||||  ||||||| ||| || ||||||||||||    
T  42604750 gagtaacgttttagaccaacttgaaacttttaaaactaaagggaccaacttgaaacttttaaaatataaagtaccaacttgaaaactaaaataaacataa 42604651  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | || |  ||||||||||||    
T  42604650 gggatcaaacatgcaattaa 42604631  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 16 - 114
Target Start/End: Original strand, 19987627 - 19987725
Alignment:
Q  16 agtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    ||||| |||||||| |||||||||||| ||||||| | |||| ||||  |||||||||||||||  || |  ||||||| ||| || ||||||||||||    
T  19987627 agtaacgttttggatcaacttaaaacttttaaaatgtgagggaccaaaataaaacttttaaaacacaaggaaccaacttgaaaactaaaataaacataa 19987725  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 67 - 137
Target Start/End: Complemental strand, 31872776 - 31872706
Alignment:
Q  67 aaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaaacc 137  Q
    ||||||||||||||||| || ||||||| ||| || ||||||||||||| || |  |||||||||||||||    
T  31872776 aaacttttaaaacgtaagggaccaactttaaaactaaaataaacataagggatcaaacatgcaattaaacc 31872706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 14 - 111
Target Start/End: Complemental strand, 13189274 - 13189177
Alignment:
Q  14 cgagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaaca 111  Q
    ||||||| |||||| |||||||  | ||| ||||||||||| |  |||| |||||||||||||||  ||| || |||||| ||||||| |||||||||    
T  13189274 cgagtaacgttttgaaccaactcgatacttttaaaatataaagcaccaacttaaaacttttaaaatataagggaccaactgaaaacctaaaataaaca 13189177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 134
Target Start/End: Complemental strand, 35795431 - 35795314
Alignment:
Q  17 gtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataaga 116  Q
    |||| ||||||||||| ||| ||||  ||||||  |||||| |||| |  |||||||||||||  || || ||||||| ||| || ||||||||||||||    
T  35795431 gtaacgttttggaccaccttgaaacctttaaaacgtaagggaccaactcgaaacttttaaaactcaagggaccaacttgaaatctaaaataaacataaga 35795332  T
Q  117 gaccgcacatgcaattaa 134  Q
    || |  ||||||||||||    
T  35795331 gatcaaacatgcaattaa 35795314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 38 - 134
Target Start/End: Complemental strand, 142908 - 142812
Alignment:
Q  38 aaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaa 134  Q
    ||||| |||||| ||||||| |||| || ||| |||||||||  || || |||||||||||||| ||||| ||||||| |||   ||||||||||||    
T  142908 aaacttttaaaacataagggaccaacttgaaaattttaaaacacaagggaccaacttaaaacctaaaatacacataagggacaaaacatgcaattaa 142812  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 31 - 115
Target Start/End: Complemental strand, 18519421 - 18519337
Alignment:
Q  31 caacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataag 115  Q
    |||||| ||| | ||||||  |||||| |||| ||||||| |||||||| ||| || ||||||||||| || |||||||||||||    
T  18519421 caacttgaaatttttaaaacgtaagggaccaacttaaaacatttaaaacataagggaccaacttaaaaactaaaataaacataag 18519337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 115
Target Start/End: Complemental strand, 33460007 - 33459915
Alignment:
Q  23 ttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataag 115  Q
    |||||||||||||| ||||| ||||||  ||| || |||| || ||||||||||||| ||| || | ||||| ||| || |||||||||||||    
T  33460007 ttttggaccaacttgaaacttttaaaacgtaaaggaccaacttgaaacttttaaaacataagggactaacttgaaaactaaaataaacataag 33459915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 68 - 115
Target Start/End: Complemental strand, 14419887 - 14419840
Alignment:
Q  68 aacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataag 115  Q
    |||||||||||| ||| || |||||||||||||| |||||||||||||    
T  14419887 aacttttaaaacataagggaccaacttaaaacctaaaataaacataag 14419840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 8718454 - 8718408
Alignment:
Q  88 ccaacttaaaacctgaaataaacataagagaccgcacatgcaattaa 134  Q
    |||||||||||||| ||||||||| ||||||||  ||||||||||||    
T  8718454 ccaacttaaaacctaaaataaacacaagagaccaaacatgcaattaa 8718408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 134
Target Start/End: Complemental strand, 48171525 - 48171443
Alignment:
Q  52 taagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaa 134  Q
    |||||| |||| || ||||||||||||| ||| || ||||| | |||||| ||||||||||||| || |  ||||||||||||    
T  48171525 taagggaccaacttgaaacttttaaaacataagggaccaacctgaaacctaaaataaacataagggatcaaacatgcaattaa 48171443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 23 - 134
Target Start/End: Complemental strand, 6043557 - 6043449
Alignment:
Q  23 ttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgc 122  Q
    ||||||| |||||||||||  ||||||||||| || | || || |||| |||||||  ||| ||   |||||||||||| ||||||| ||||| ||||      
T  6043557 ttttggatcaacttaaaacaattaaaatataatggacaaacttgaaacatttaaaatataatgg---aacttaaaacctaaaataaatataagggaccaa 6043461  T
Q  123 acatgcaattaa 134  Q
    ||||||||||||    
T  6043460 acatgcaattaa 6043449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 135
Target Start/End: Original strand, 18519634 - 18519702
Alignment:
Q  67 aaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaaa 135  Q
    ||||||||||||||||   | ||||||| ||| || |||||||||||||||| |  |||||||||||||    
T  18519634 aaacttttaaaacgtatgagaccaacttgaaaactaaaataaacataagagatcaaacatgcaattaaa 18519702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 55; Significance: 1e-22; HSPs: 17)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 32629183 - 32629061
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||| ||||| ||||  ||||||| |||||| |||| |||||| ||||||||| |||||||| |||||||||||| ||||||||||||    
T  32629183 gagtaacgttttggactaacttgaaacctttaaaatgtaagggaccaacttaaaatttttaaaacataaaggtctaacttaaaacctaaaataaacataa 32629084  T
Q  115 gagaccgcacatgcaattaaacc 137  Q
    | || |  ||||| |||||||||    
T  32629083 gggatcaaacatgtaattaaacc 32629061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 17 - 134
Target Start/End: Original strand, 34829850 - 34829967
Alignment:
Q  17 gtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataaga 116  Q
    |||| |||||| |||||||| ||||  ||||||  |||||| ||||  | ||||||||||||| |||  | |||||||||||||| ||||||||||||||    
T  34829850 gtaacgttttgaaccaacttgaaacctttaaaacgtaagggaccaacatgaaacttttaaaacataagagaccaacttaaaacctaaaataaacataaga 34829949  T
Q  117 gaccgcacatgcaattaa 134  Q
    || |  ||||||||||||    
T  34829950 gatcaaacatgcaattaa 34829967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 10567583 - 10567483
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||| |||||||| ||||| ||||||  |||||| |||| || ||||||||||||||||| || |||| || ||| || ||||||||||||    
T  10567583 gagtaacgttttgaaccaacttgaaacttttaaaacgtaagggaccaacttgaaacttttaaaacgtaagggaccaatttgaaaactaaaataaacataa 10567484  T
Q  115 g 115  Q
    |    
T  10567483 g 10567483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 35 - 115
Target Start/End: Complemental strand, 22793401 - 22793321
Alignment:
Q  35 ttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataag 115  Q
    |||||||| |||||| ||||||| |||| || ||||||||||||| ||| || ||||||| |||||| |||||||||||||    
T  22793401 ttaaaacttttaaaacataagggaccaacttgaaacttttaaaacataagggaccaacttgaaacctaaaataaacataag 22793321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 17 - 111
Target Start/End: Original strand, 32629345 - 32629439
Alignment:
Q  17 gtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaaca 111  Q
    |||| |||||| || ||||| ||| | |||||||||||||| |||| | |||||||||||||| |||| | |||||||||||||  |||||||||    
T  32629345 gtaacgttttgaacgaacttgaaatttttaaaatataagggaccaactcaaaacttttaaaacataaaagaccaacttaaaaccaaaaataaaca 32629439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 134
Target Start/End: Original strand, 6611937 - 6612049
Alignment:
Q  22 gttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccg 121  Q
    ||||||||||||||| ||||  ||||||  |||||| |||| || |||||||||||||  || ||  |||||||||| || |||||||||||||| | |     
T  6611937 gttttggaccaacttgaaacatttaaaacgtaagggaccaacttgaaacttttaaaacacaagggatcaacttaaaatctaaaataaacataagacatca 6612036  T
Q  122 cacatgcaattaa 134  Q
     ||||||||||||    
T  6612037 aacatgcaattaa 6612049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 22793612 - 22793679
Alignment:
Q  67 aaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaa 134  Q
    ||||||||||||||||| || ||||||| |||||| ||||||||||||| || |  ||||||||||||    
T  22793612 aaacttttaaaacgtaagggaccaacttgaaacctaaaataaacataagggatcaaacatgcaattaa 22793679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 65 - 135
Target Start/End: Original strand, 6210292 - 6210362
Alignment:
Q  65 taaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaaa 135  Q
    ||||||||||||||| ||| |  ||||||||||| || ||||||||||||||||| | |||| ||||||||    
T  6210292 taaaacttttaaaacataaggcaccaacttaaaatctaaaataaacataagagactgaacatacaattaaa 6210362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 1 - 110
Target Start/End: Complemental strand, 6611746 - 6611636
Alignment:
Q  1 aacttattccaatc-gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaac 99  Q
    |||||||||||||  ||| || |||||| |||||||| ||||| |||||| || |||| |||| || ||||||||||||| ||| || ||||| | ||||    
T  6611746 aacttattccaattagagcaacgttttgaaccaacttgaaacttttaaaacatgagggaccaacttgaaacttttaaaacataagggaccaacctgaaac 6611647  T
Q  100 ctgaaataaac 110  Q
    || ||||||||    
T  6611646 ctaaaataaac 6611636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 189 - 225
Target Start/End: Complemental strand, 2341617 - 2341581
Alignment:
Q  189 aatattttagttagtatttgtccctccctctaatttt 225  Q
    |||||||||||||||||||||| ||||||||||||||    
T  2341617 aatattttagttagtatttgtcgctccctctaatttt 2341581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 15 - 113
Target Start/End: Complemental strand, 17343008 - 17342910
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacata 113  Q
    |||||| |||||||||||| || ||||| ||||||  |||  | |||| || ||| ||||||||| ||| || ||||||| |||||| |||||||||||    
T  17343008 gagtaacgttttggaccaatttgaaacttttaaaacgtaaaagaccaacttgaaatttttaaaacataagggaccaacttgaaacctaaaataaacata 17342910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 1 - 69
Target Start/End: Complemental strand, 28613301 - 28613232
Alignment:
Q  1 aacttattccaatc-gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaa 69  Q
    |||||||||||||  |||||| |||||||||||||||| |||| ||||||  |||||| |||| ||||||    
T  28613301 aacttattccaatatgagtaacgttttggaccaacttacaacttttaaaacgtaagggaccaacttaaaa 28613232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 83
Target Start/End: Complemental strand, 29674990 - 29674929
Alignment:
Q  22 gttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaa 83  Q
    |||||||| |||||| ||||| ||||||  |||||| |||| || |||||||||||||||||    
T  29674990 gttttggatcaacttgaaacttttaaaacttaagggaccaacttgaaacttttaaaacgtaa 29674929  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Original strand, 10567754 - 10567818
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaac 79  Q
    |||||| ||||||||||||||| ||||| ||||||  |||||| |||| || ||||| |||||||    
T  10567754 gagtaatgttttggaccaacttgaaacttttaaaacgtaagggaccaacttgaaactcttaaaac 10567818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 67 - 115
Target Start/End: Original strand, 11122245 - 11122293
Alignment:
Q  67 aaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataag 115  Q
    ||||||||||||| |||| | |||||||| ||||| |||||||||||||    
T  11122245 aaacttttaaaacataaatgaccaacttacaacctaaaataaacataag 11122293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 115
Target Start/End: Complemental strand, 28613271 - 28613215
Alignment:
Q  59 ccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataag 115  Q
    |||| ||| |||||||||||||||| || ||||||||||| || ||||||| |||||    
T  28613271 ccaacttacaacttttaaaacgtaagggaccaacttaaaaactaaaataaatataag 28613215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 27 - 115
Target Start/End: Complemental strand, 29674956 - 29674868
Alignment:
Q  27 ggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataag 115  Q
    |||||||||| ||||| ||||||  |||||  |||| || ||||||||||||  ||| || ||||||| |||||| || ||||||||||    
T  29674956 ggaccaacttgaaacttttaaaacgtaaggaaccaacttgaaacttttaaaatataagggaccaacttgaaacctaaattaaacataag 29674868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 6e-21; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 33992628 - 33992747
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||| ||||| |||||||| ||||||  |||||  ||||||||||||||||||||| |||||| |||| |||||| || ||||||||||||    
T  33992628 gagtaacgttttgaaccaatttaaaacttttaaaacgtaaggaaccaatttaaaacttttaaaacataaaggaccaatttaaaaactaaaataaacataa 33992727  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | || |  ||||||||||||    
T  33992728 gggatcaaacatgcaattaa 33992747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 137
Target Start/End: Original strand, 25508097 - 25508219
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||||||||||||||||||   ||||||||| || | || || ||||||||||||| ||| ||  ||||||||||||| |||| ||| |||    
T  25508097 gagtaacgttttggaccaacttaaaactaaaaaaatataaaggacgaacttgaaacttttaaaacataagggagcaacttaaaacctaaaatcaacttaa 25508196  T
Q  115 gagaccgcacatgcaattaaacc 137  Q
    | ||||  |||||||||||||||    
T  25508197 gggaccaaacatgcaattaaacc 25508219  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 16 - 134
Target Start/End: Complemental strand, 19935552 - 19935435
Alignment:
Q  16 agtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataag 115  Q
    ||||| ||||||||||||||| || || |||||| || |||| |||| || ||| || |||||| ||| || |||||||||||||  |||||||||||||    
T  19935552 agtaatgttttggaccaacttgaa-cttttaaaacatcagggaccaacttgaaatttataaaacataatggaccaacttaaaaccaaaaataaacataag 19935454  T
Q  116 agaccgcacatgcaattaa 134  Q
    |||||  ||||||||||||    
T  19935453 agacccaacatgcaattaa 19935435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 33992448 - 33992336
Alignment:
Q  22 gttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccg 121  Q
    |||||| |||||||| ||||| ||||||  |||||| |||||||||||||| |||||| ||| || | ||||| ||| || ||||||||||||| || |     
T  33992448 gttttgaaccaacttgaaacttttaaaacgtaagggaccaatttaaaacttataaaacataagggacgaacttgaaaactaaaataaacataagggatca 33992349  T
Q  122 cacatgcaattaa 134  Q
     ||||||||||||    
T  33992348 aacatgcaattaa 33992336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 98
Target Start/End: Original strand, 34065285 - 34065368
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaa 98  Q
    |||||| |||||  |||||||| ||||| |||||||||||||| |||| |||||||||||||||| |||  | |||||||||||    
T  34065285 gagtaacgtttttaaccaactttaaacttttaaaatataagggaccaacttaaaacttttaaaacataagagaccaacttaaaa 34065368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 67 - 137
Target Start/End: Original strand, 16643061 - 16643131
Alignment:
Q  67 aaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaaacc 137  Q
    ||||||||||||  |||||| ||||| |||||||| ||||| || |||||||||  |||| ||||||||||    
T  16643061 aaacttttaaaatataaaggaccaacataaaacctaaaatacacgtaagagaccaaacatacaattaaacc 16643131  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 65 - 137
Target Start/End: Complemental strand, 19328478 - 19328406
Alignment:
Q  65 taaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaaacc 137  Q
    ||||| ||||||||  |||||| ||||||||||| || ||||||||||||| || |   ||||||||||||||    
T  19328478 taaaatttttaaaatataaaggaccaacttaaaaactaaaataaacataagggatcaatcatgcaattaaacc 19328406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 53
Target Start/End: Complemental strand, 41563832 - 41563800
Alignment:
Q  21 agttttggaccaacttaaaactcttaaaatata 53  Q
    |||||||||||||||||||||| ||||||||||    
T  41563832 agttttggaccaacttaaaacttttaaaatata 41563800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 49; Significance: 4e-19; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 15 - 115
Target Start/End: Original strand, 51388051 - 51388151
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||||||||| |||||||| ||||||| ||||||  ||| |||||||||||||||| |||  | ||||||||||| || ||||||||||||    
T  51388051 gagtaacgttttggaccaatttaaaacttttaaaatgtaagggatcaacttaaaacttttaaaacataagagaccaacttaaaaactaaaataaacataa 51388150  T
Q  115 g 115  Q
    |    
T  51388151 g 51388151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 54341323 - 54341201
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||||| ||||||  |||||| |||| |||||||||||||||| | || | |||| |||||  || ||||||||||||    
T  54341323 gagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttaaaacttttaaaacatgaacgaccaatttaaatactaaaataaacataa 54341224  T
Q  115 gagaccgcacatgcaattaaacc 137  Q
    | || |  |||||||||||||||    
T  54341223 gggatcaaacatgcaattaaacc 54341201  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 33241959 - 33241847
Alignment:
Q  22 gttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccg 121  Q
    |||||||||||| || ||||| |||||||||||||  |||| |||||||||||||||| ||| ||  |||||| |||||| |||||||| |||| ||||     
T  33241959 gttttggaccaatttgaaacttttaaaatataaggaaccaaattaaaacttttaaaacataagggaacaacttgaaacctaaaataaacttaagggacca 33241860  T
Q  122 cacatgcaattaa 134  Q
      |||||||||||    
T  33241859 accatgcaattaa 33241847  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 15 - 115
Target Start/End: Complemental strand, 48618600 - 48618500
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||| |||||||| ||| | |||||| ||||||  ||||||||||||||||||||| ||||   |||| ||||||||| ||||||||||||    
T  48618600 gagtaacgttttgaaccaacttgaaattgttaaaacataaggaaccaatttaaaacttttaaaacataaataaccaatttaaaacctaaaataaacataa 48618501  T
Q  115 g 115  Q
    |    
T  48618500 g 48618500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 15 - 108
Target Start/End: Complemental strand, 19540944 - 19540851
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataa 108  Q
    |||||| |||||| ||||| |||||||| |||||| |||| || ||||  ||||||||||||||| ||| || |||||||||||||| ||||||    
T  19540944 gagtaacgttttgaaccaatttaaaactgttaaaacataaaggaccaacataaaacttttaaaacataagggaccaacttaaaacctaaaataa 19540851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 33419834 - 33419953
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||| | ||||||||||||| ||||||  |||||| |||  || ||||||||||||| ||| || |||||||||||  | ||||||||||||    
T  33419834 gagtaacgttttagtccaacttaaaacttttaaaacgtaagggaccatcttgaaacttttaaaacataagggaccaacttaaaaagtaaaataaacataa 33419933  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | || |  ||||||||||||    
T  33419934 gggatcaaacatgcaattaa 33419953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 15 - 113
Target Start/End: Original strand, 37285840 - 37285938
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacata 113  Q
    |||||| |||||| |||||||| ||| | ||||||||||| ||  ||| || ||||||||||||  ||| || |||||||||||||| |||||||||||    
T  37285840 gagtaacgttttgaaccaacttgaaatttttaaaatataaagggtcaacttgaaacttttaaaatataagggaccaacttaaaacctaaaataaacata 37285938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 33419660 - 33419597
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaa 78  Q
    |||||| ||||||||||||||| ||||| ||||||  |||||| |||| |||||||||||||||    
T  33419660 gagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttaaaacttttaaaa 33419597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 27 - 118
Target Start/End: Complemental strand, 30547846 - 30547756
Alignment:
Q  27 ggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagaga 118  Q
    |||||||||||||||  ||||||  |||||| |||| |||||||||||||||| |||  | ||||| |||||  | ||||||||||||||||    
T  30547846 ggaccaacttaaaacctttaaaaagtaagggaccaacttaaaacttttaaaacataagcgaccaacctaaaa-ttaaaataaacataagaga 30547756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 33419619 - 33419577
Alignment:
Q  27 ggaccaacttaaaactcttaaaatataagggtccaatttaaaa 69  Q
    |||||||||||||||| |||||| ||||||| |||||||||||    
T  33419619 ggaccaacttaaaacttttaaaagataaggggccaatttaaaa 33419577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0548 (Bit Score: 48; Significance: 1e-18; HSPs: 1)
Name: scaffold0548
Description:

Target: scaffold0548; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 3324 - 3443
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||||| ||||| ||||||  |||||| |||| || ||||||||||||| ||| || ||||||| ||| || ||||||||||||    
T  3324 gagtaacgttttggaccaacttgaaacttttaaaacgtaagggaccaacttgaaacttttaaaacataagggaccaacttgaaaactaaaataaacataa 3423  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | || |  ||||||||||||    
T  3424 gggatcaaacatgcaattaa 3443  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056 (Bit Score: 48; Significance: 1e-18; HSPs: 2)
Name: scaffold0056
Description:

Target: scaffold0056; HSP #1
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 15 - 134
Target Start/End: Original strand, 63016 - 63135
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||||||||||| | ||||| ||||||| |||||| |||| || ||||||||||||| | |||| |||| |||||| || ||||||||||||    
T  63016 gagtaacgttttggaccaacctgaaacttttaaaatgtaagggaccaacttgaaacttttaaaacatgaaggaccaatttaaaaactaaaataaacataa 63115  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | || |  ||||||||||||    
T  63116 gggatcaaacatgcaattaa 63135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0056; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 15 - 79
Target Start/End: Complemental strand, 62846 - 62782
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaac 79  Q
    |||||| ||||||||||||||||||||| ||||||  ||||||   || || |||||||||||||    
T  62846 gagtaacgttttggaccaacttaaaacttttaaaacgtaagggattaacttgaaacttttaaaac 62782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 47; Significance: 6e-18; HSPs: 15)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 15 - 137
Target Start/End: Complemental strand, 24185788 - 24185667
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||||  ||||||||||||| ||||  |||||| ||||| | |||||| |||||||||||||| |||||| ||||||| |||||| |||||||||  |    
T  24185788 gagtaaatatttggaccaacttgaaacctttaaaacataagtgaccaatt-aaaacttttaaaacataaaggaccaacttgaaacctaaaataaacacga 24185690  T
Q  115 gagaccgcacatgcaattaaacc 137  Q
    | ||||  |||||||||||||||    
T  24185689 gtgaccaaacatgcaattaaacc 24185667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 22 - 114
Target Start/End: Complemental strand, 6376479 - 6376387
Alignment:
Q  22 gttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| | |||||| ||||| ||||||  |||||| |||| |||||||||||||||| |||||  |||||||||||||| ||||||||||||    
T  6376479 gttttgaatcaacttgaaacttttaaaacctaagggaccaacttaaaacttttaaaacataaagaaccaacttaaaacctaaaataaacataa 6376387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 1 - 136
Target Start/End: Original strand, 48462070 - 48462207
Alignment:
Q  1 aacttattccaat-cgagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaac 99  Q
    ||||||||||||  || |||| |||||||| |||||||||||| |||||| ||||  | |||| || ||||||||||||| ||| || |||||||||||     
T  48462070 aacttattccaaggcgggtaacgttttggatcaacttaaaacttttaaaacataaatgaccaacttgaaacttttaaaacataagggaccaacttaaaaa 48462169  T
Q  100 ctgaaat-aaacataagagaccgcacatgcaattaaac 136  Q
    || |||| |||||||||||| |  ||||| ||||||||    
T  48462170 ctaaaataaaacataagagatcaaacatgtaattaaac 48462207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 66 - 142
Target Start/End: Original strand, 10017937 - 10018013
Alignment:
Q  66 aaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaaacccaaaa 142  Q
    |||||||||||||| |||  | |||||||||||||| ||||||||||||||||||  |||| |||||||||| ||||    
T  10017937 aaaacttttaaaacataagagaccaacttaaaacctaaaataaacataagagaccaaacatacaattaaacctaaaa 10018013  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 1 - 134
Target Start/End: Complemental strand, 34535826 - 34535695
Alignment:
Q  1 aacttattccaatc-gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaac 99  Q
    |||||||||||||  |||||| ||||||||||||||||||||| ||||||  |||||| |||  || |||||||||||||   |  | |||||||||||     
T  34535826 aacttattccaatatgagtaacgttttggaccaacttaaaacttttaaaacgtaagggaccagcttgaaacttttaaaac---agagaccaacttaaaaa 34535730  T
Q  100 ctgaaataaacataagagaccgcacatgcaattaa 134  Q
    || ||||||||||||| || |  ||||||||||||    
T  34535729 ctaaaataaacataagggatcaaacatgcaattaa 34535695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 23 - 134
Target Start/End: Original strand, 36469835 - 36469945
Alignment:
Q  23 ttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgc 122  Q
    |||||||||||||| ||||| ||||||  |||||| |||| ||||||||||||||||   |||| |||| || ||| || |||||||||||||||| |      
T  36469835 ttttggaccaacttgaaacttttaaaacgtaagggaccaacttaaaacttttaaaacacgaaggaccaatttgaaa-ctaaaataaacataagagatcaa 36469933  T
Q  123 acatgcaattaa 134  Q
    ||||||||||||    
T  36469934 acatgcaattaa 36469945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 15 - 118
Target Start/End: Complemental strand, 48461912 - 48461809
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||||| |||||| | ||| ||||||  |||| | |||| |||||||||||||||| ||||||  |||||||||| || ||| ||||||||    
T  48461912 gagtaacgttttggatcaacttcatacttttaaaacgtaagagaccaacttaaaacttttaaaacataaaggatcaacttaaaaactaaaacaaacataa 48461813  T
Q  115 gaga 118  Q
    ||||    
T  48461812 gaga 48461809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 15 - 136
Target Start/End: Original strand, 34535976 - 34536097
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| ||||| || |||||| |||||  |||||  |||| | |||| ||||||||||||||| |||| || ||||||||||| || | ||||||||||    
T  34535976 gagtaacgtttttgatcaacttgaaacttctaaaacgtaagagaccaacttaaaacttttaaaatgtaagggaccaacttaaaaactaagataaacataa 34536075  T
Q  115 gagaccgcacatgcaattaaac 136  Q
    | || |  ||||||||||||||    
T  34536076 gggatcaaacatgcaattaaac 34536097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 15 - 134
Target Start/End: Complemental strand, 22566421 - 22566304
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||||| |||||||||||||   ||||| ||||||  |||||| |||| || ||||||||||||| ||| || |||| |||||| || ||||||||||||    
T  22566421 gagtaacgttttggaccaacg--aaacttttaaaacgtaagggaccaacttgaaacttttaaaacataagggaccaatttaaaaactaaaataaacataa 22566324  T
Q  115 gagaccgcacatgcaattaa 134  Q
    | || |  ||||||||||||    
T  22566323 gggatcaaacatgcaattaa 22566304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 22 - 134
Target Start/End: Complemental strand, 43510992 - 43510881
Alignment:
Q  22 gttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccg 121  Q
    ||||||||||||||| ||||  ||||||||||||  || || || ||||||||||||| ||| |    |||||||||| ||||||||||||||||||||     
T  43510992 gttttggaccaacttgaaacatttaaaatataagaatc-aacttgaaacttttaaaacataatgaattaacttaaaacttgaaataaacataagagacca 43510894  T
Q  122 cacatgcaattaa 134  Q
     ||||| ||||||    
T  43510893 aacatgtaattaa 43510881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 15 - 78
Target Start/End: Complemental strand, 8560749 - 8560686
Alignment:
Q  15 gagtaaagttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaa 78  Q
    |||||| ||||||||||||| | ||||| ||||||| || ||| |||| |||||||||||||||    
T  8560749 gagtaacgttttggaccaacatgaaacttttaaaatgtaggggaccaacttaaaacttttaaaa 8560686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 59 - 118
Target Start/End: Complemental strand, 17814052 - 17813993
Alignment:
Q  59 ccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagaga 118  Q
    ||||||| ||||||||||||| |||  | ||||||| |||||| ||||||||||||||||    
T  17814052 ccaatttgaaacttttaaaacataagagaccaacttgaaacctaaaataaacataagaga 17813993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 65 - 114
Target Start/End: Original strand, 6376702 - 6376751
Alignment:
Q  65 taaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataa 114  Q
    |||| |||||||||| |||| | |||||||||||||| ||||||||||||    
T  6376702 taaagcttttaaaacataaatgaccaacttaaaacctaaaataaacataa 6376751  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 22 - 115
Target Start/End: Complemental strand, 7460684 - 7460591
Alignment:
Q  22 gttttggaccaacttaaaactcttaaaatataagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataag 115  Q
    ||||||||||||||| ||| | ||||||  |||||| |||| || ||| ||||||||| ||| ||  |||||| ||| || |||||||||||||    
T  7460684 gttttggaccaacttgaaatttttaaaacgtaagggaccaacttgaaatttttaaaacataagggatcaacttgaaaactaaaataaacataag 7460591  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 59 - 135
Target Start/End: Original strand, 7460878 - 7460954
Alignment:
Q  59 ccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaaa 135  Q
    ||||||| ||||||||||||| |||  | ||||||| ||| || ||||||||||||| || |  |||||||||||||    
T  7460878 ccaatttgaaacttttaaaacataagtgaccaacttgaaaactaaaataaacataagggatcaaacatgcaattaaa 7460954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0400
Description:

Target: scaffold0400; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 9917 - 9984
Alignment:
Q  67 aaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaa 134  Q
    ||||||||||||| |||  | |||||||||||||| |||||||||||||||| |  ||||||||||||    
T  9917 aaacttttaaaacataagagaccaacttaaaacctaaaataaacataagagatcaaacatgcaattaa 9984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0400; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 9662 - 9596
Alignment:
Q  52 taagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagaga 118  Q
    |||||| ||||||| ||||||||||||| ||| || ||| |||||||  | ||||||||||||||||    
T  9662 taagggaccaatttgaaacttttaaaacataagggaccatcttaaaaattaaaataaacataagaga 9596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365 (Bit Score: 36; Significance: 0.00000000002; HSPs: 2)
Name: scaffold0365
Description:

Target: scaffold0365; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 10560 - 10627
Alignment:
Q  67 aaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaa 134  Q
    ||||||||||||| |||  | |||||||||||||| |||||||||||||||| |  ||||||||||||    
T  10560 aaacttttaaaacataagagaccaacttaaaacctaaaataaacataagagatcaaacatgcaattaa 10627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0365; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 52 - 118
Target Start/End: Complemental strand, 10305 - 10239
Alignment:
Q  52 taagggtccaatttaaaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagaga 118  Q
    |||||| ||||||| ||||||||||||| ||| || ||| |||||||  | ||||||||||||||||    
T  10305 taagggaccaatttgaaacttttaaaacataagggaccatcttaaaaattaaaataaacataagaga 10239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0015 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 67 - 134
Target Start/End: Original strand, 47420 - 47487
Alignment:
Q  67 aaacttttaaaacgtaaaggtccaacttaaaacctgaaataaacataagagaccgcacatgcaattaa 134  Q
    ||||||||||||| |||  | |||||||||||||| ||||||||||||| ||||  ||||||||||||    
T  47420 aaacttttaaaacataagcgaccaacttaaaacctaaaataaacataagggaccaaacatgcaattaa 47487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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