View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_93 (Length: 233)
Name: NF16068_low_93
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_93 |
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| [»] scaffold0022 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 166; Significance: 5e-89; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 166; E-Value: 5e-89
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 25143217 - 25143032
Alignment:
| Q |
1 |
gtgacattttggtgatgatgatgagcatgggggcagttttcgttttttgtagaaggagggttattggttggtgatgctggagagggagagttttatgggt |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||| |
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| T |
25143217 |
gtgacattttggtgatgatgatgagcatgggggcagttttcgttttttgtagaaggagggttattggttggtgatgctggagagagagggttttatgggt |
25143118 |
T |
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| Q |
101 |
agatgctttagtttttcagccattgtttgaattttcttgtaaaataatgtggtttgttgttgttgggtttggagtttaaatgtaaa |
186 |
Q |
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||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
25143117 |
agatgctttagtttttcagccgctgtttgaattttcttgtaaaataatgtggtttgttgttgttgggtttggagtttgaatgtaaa |
25143032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 154; Significance: 8e-82; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 154; E-Value: 8e-82
Query Start/End: Original strand, 1 - 186
Target Start/End: Complemental strand, 31039314 - 31039130
Alignment:
| Q |
1 |
gtgacattttggtgatgatgatgagcatgggggcagttttcgttttttgtagaaggagggttattggttggtgatgctggagagggagagttttatgggt |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
31039314 |
gtgacattttggtgatgatgatgagcatgggg-cagttttcgttttttgtagaaggagggttattggttggtgatgctggagagggagagttttatgggt |
31039216 |
T |
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| Q |
101 |
agatgctttagtttttcagccattgtttgaattttcttgtaaaataatgtggtttgttgttgttgggtttggagtttaaatgtaaa |
186 |
Q |
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||||||||||||||||||||| |||||| ||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
31039215 |
agatgctttagtttttcagccgctgtttggattttcttgtaaaataatgtggtttactgttgttgggtttggagtttgaatgtaaa |
31039130 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 150; Significance: 2e-79; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 150; E-Value: 2e-79
Query Start/End: Original strand, 1 - 186
Target Start/End: Original strand, 28164652 - 28164836
Alignment:
| Q |
1 |
gtgacattttggtgatgatgatgagcatgggggcagttttcgttttttgtagaaggagggttattggttggtgatgctggagagggagagttttatgggt |
100 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| |
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| T |
28164652 |
gtgacattttggtgatgatgatgagcatgggg-cagttttcgttttttgtagaaggagggttattggttggtgatgctagagagggagggttttatgggt |
28164750 |
T |
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| Q |
101 |
agatgctttagtttttcagccattgtttgaattttcttgtaaaataatgtggtttgttgttgttgggtttggagtttaaatgtaaa |
186 |
Q |
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||||||||||||||||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |
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| T |
28164751 |
agatgctttagtttttcagccgctgtttggattttcttgtaaaataatgtggtttgctgttgttgggtttggagtttgaatgtaaa |
28164836 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 27262320 - 27262184
Alignment:
| Q |
1 |
gtgacattttggtgatgatgatgagcatgggggcagttttcgttttttgtagaaggagggttattggttggtgatgctggagagggagag-ttttatggg |
99 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||| |||||| ||||||||||| | ||||||||| |
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| T |
27262320 |
gtgacattttggtgatgatgatgagcatgggg-cagttttcgttttt-gtagaaggagggttattggttagtgatgttggagagggagggtttttatggg |
27262223 |
T |
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| Q |
100 |
tagatgctttagtttttcagccattgtttgaattttctt |
138 |
Q |
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||||| ||||||||||||||| |||||| |||||||| |
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| T |
27262222 |
tagattctttagtttttcagctgctgtttggattttctt |
27262184 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 67272 - 67319
Alignment:
| Q |
139 |
gtaaaataatgtggtttgttgttgttgggtttggagtttaaatgtaaa |
186 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
67272 |
gtaaaataatgtggtttgttgttgttgggtcgggagtttgaatgtaaa |
67319 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 36; Significance: 0.00000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 139 - 186
Target Start/End: Original strand, 32747591 - 32747638
Alignment:
| Q |
139 |
gtaaaataatgtggtttgttgttgttgggtttggagtttaaatgtaaa |
186 |
Q |
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|||||||||||||||||||||||||||||| ||||||| |||||||| |
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| T |
32747591 |
gtaaaataatgtggtttgttgttgttgggtcgggagtttgaatgtaaa |
32747638 |
T |
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