View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF16068_low_97 (Length: 224)
Name: NF16068_low_97
Description: NF16068
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF16068_low_97 |
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| [»] scaffold0015 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 175; Significance: 2e-94; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 175; E-Value: 2e-94
Query Start/End: Original strand, 13 - 207
Target Start/End: Original strand, 14723630 - 14723824
Alignment:
| Q |
13 |
attattctcaatatgttgcaggtgttgaatgatagtgatgcggccttgttttgttgtactttgtggagcatttggaaacaaaggaacaacaaggtttgga |
112 |
Q |
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| T |
14723630 |
attattttcaatatgttgcaggcgctgaatgatagtgatgcggccttgttttgttgtactttgtggagcatttgaaaacaaaggaacaacaaggtttgga |
14723729 |
T |
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| Q |
113 |
atgaggtgactgacgcacaacgtctcgtttttgagcgtgcaaagaccttattggatgactcgaaggcagccaaggattttcgccaaccactttct |
207 |
Q |
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| T |
14723730 |
atgaggtgactgacgcacaacgtctcgtttttgagcgtgcaaagaccttattggatgactcgaaggcagccaaggattttcaccaaccactttct |
14723824 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 60 - 116
Target Start/End: Original strand, 38860529 - 38860585
Alignment:
| Q |
60 |
gttttgttgtactttgtggagcatttggaaacaaaggaacaacaaggtttggaatga |
116 |
Q |
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| T |
38860529 |
gttttgttgcattttgtggagcatttggaagcaaagaaataacaatgtttggaatga |
38860585 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 29 - 201
Target Start/End: Original strand, 45421052 - 45421224
Alignment:
| Q |
29 |
tgcaggtgttgaatgatagtgatgcggccttgttttgttgtactttgtggagcatttggaaacaaaggaacaacaaggtttggaatgaggtgactgacgc |
128 |
Q |
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| T |
45421052 |
tgcaggtgttgaatgctggtgatgcagccttgttttgttgtactttgtggagcatttggaaacaaaggaataataaggtttggaatgaagtgactgacgc |
45421151 |
T |
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| Q |
129 |
acaacgtctcgtttttgagcgtgcaaagaccttattggatgactcgaaggcagccaaggattttcgccaacca |
201 |
Q |
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| T |
45421152 |
ataaagtttcgttttttaccgcgcaaagactttactagatgaccggaagacagctaaggattttcgccaacca |
45421224 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 93; Significance: 2e-45; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 29 - 201
Target Start/End: Complemental strand, 3982393 - 3982221
Alignment:
| Q |
29 |
tgcaggtgttgaatgatagtgatgcggccttgttttgttgtactttgtggagcatttggaaacaaaggaacaacaaggtttggaatgaggtgactgacgc |
128 |
Q |
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| T |
3982393 |
tgcaggtgctgaatgctggtgatgcagccttgttttgttgtactttgtggagcatttggaaacaaaggaataataaggtttggaatgaattgactgacgc |
3982294 |
T |
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| Q |
129 |
acaacgtctcgtttttgagcgtgcaaagaccttattggatgactcgaaggcagccaaggattttcgccaacca |
201 |
Q |
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| T |
3982293 |
acaaagattcgtttttgaccgcgcaaagactttactagatgactggaagacagctaaggatttttgccaacca |
3982221 |
T |
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Target: scaffold0015 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 47 - 156
Target Start/End: Complemental strand, 52721 - 52612
Alignment:
| Q |
47 |
gtgatgcggccttgttttgttgtactttgtggagcatttggaaacaaaggaacaacaaggtttggaatgaggtgactgacgcacaacgtctcgtttttga |
146 |
Q |
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| T |
52721 |
gtgatgcggcgctattttgttgtcttttgtggagtatttggaaacaaagaaataacaagattaggaatgaggtgatagatgcacaatgttttgtttttga |
52622 |
T |
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| Q |
147 |
gcgtgcaaag |
156 |
Q |
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| T |
52621 |
gtgcgcaaag |
52612 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 78 - 111
Target Start/End: Complemental strand, 14665522 - 14665489
Alignment:
| Q |
78 |
gagcatttggaaacaaaggaacaacaaggtttgg |
111 |
Q |
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| T |
14665522 |
gagcatttggaaacaaaggaacaacaagatttgg |
14665489 |
T |
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